Job Description P37690 Confidence 96.80% Date Thu Jan 5 11:57:02 GMT 2012 Rank 22 Aligned Residues 221 % Identity 8% Template c2oexB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: structure of alix/aip1 v domain Resolution 2.58 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	D	Q	L	K	S	I	Q	A	D	I	A	A	K	E	R	A	V	R	Q	K	Q	Q	Q	R	A	S	L	L	A	Q	L	K	K	Q	E	E	A	I	S	E	A	T	R	K	L	R	E	T	Q	N	T	L	N	Q	L	N	K	Q	I	D	E	M	N	A	S	I	A	K	L	E	Q	Q	K	A	A	Q	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	E	L	Y	K	P	L	R	A	E	G	T	N	F	R	T	V	L	D	K	A	V	Q	A	D	G	Q	V	K	E	C	Y	Q	S	H	R	D	T	I	V	L	L	C	K	P	E	P	E	L	N	A	A	I	P	S	A	N	P	A	K	T	X	Q	G	S	E	V	V	N	V	L	K	S	L	L	S	N	L	D
Template Known Secondary structure						T																														T	T								T	S							T	T	S							T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	A	A	Q	L	D	A	A	F	R	Q	G	E	H	T	G	I	Q	L	I	L	S	G	E	E	S	Q	R	G	Q	R	L	Q	A	Y	F	G	Y	L	N	Q	A	R	Q	E	T	I	A	Q	L	K	Q	T	R	E	E	V	A	M	Q	R	A	E	L	E	E	K	Q	S	E	Q	Q	T	L	L	Y	E	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	K	K	E	R	E	G	L	E	N	D	L	K	S	V	N	F	D	X	T	S	K	F	L	T	A	L	A	Q	D	G	V	I	N	E	E	A	L	S	V	T	E	L	D	R	V	Y	G	G	L	T	T	K	V	Q	E	S	L	K	K	Q	E	G	L	L	K	N	I	Q	V	S	H	Q	E	F	S	K	X	K
Template Known Secondary structure																T																S	S	S															T																													T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	Q	A	K	L	T	Q	A	L	N	E	R	K	K	T	L	A	G	L	E	S	S	I	Q	Q	G	Q	Q	Q	L	S	E	L	R	A	N	E	S	R	L	R	N	S	I	A	R	A	E	A	A	A	K	A	R	A	E	R	E	A	R	E
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		Q	S	N	N	E	A	N	L	R	E	E	V	L	K	.	N	L	A	T	A	Y	D	N	F	V	E	L	V	A	N	L	K	E	G	T	K	F	Y	N	E	L	T	E	I	L	V	R	F	Q	N	K	C	S	D	I	V	F	A	R	K	T	E
Template Known Secondary structure																.																																															T
Template Predicted Secondary structure																.
Template SS confidence
		641	.	.	.	.	.	.	.	.	650	.	.	.	.		.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions