Job Description P37690 Confidence 28.10% Date Thu Jan 5 11:57:02 GMT 2012 Rank 269 Aligned Residues 129 % Identity 9% Template c2dupB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vesicular integral-membrane protein vip36; PDBTitle: crystal structure of vip36 exoplasmic/lumenal domain, metal-free form Resolution 2.10 Å

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		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.								.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.
Query Sequence		M	S	R	T	G	G	L	G	A	P	R	G	Q	A	F	W	P	V	R	G	P	T	L	H	R	Y	G	E	Q	L	Q	G	E	L	R	W	K	G	M	V	I	G	A	S	E	G	T	E	V	.	.	.	.	.	.	.	K	A	I	A	D	G	R	V	I	L	A	D	W	L	Q	G	Y	G	L	V	V	V	V	E
Query Conservation																																																			.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	R	L	V	P	G	P	V	F	G	S	K	D	N	F	H	G	L	A	I	F	L	D	T	Y	P	N	D	E	T	T	E	R	V	F	P	Y	I	S	V	M	V	N	N	G	S	L	S	Y	D	H	S	K	D	G	R	W	T	E	L	A	G	C	T	A	D	F	R	N	R	D	H	D	T	F	L	A	V	R
Template Known Secondary structure		S			S				S	B	T	T	B		S	S															T	T					S	S									S						T	T	T	T	T	T	T	T										B	T		S	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370							.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.			400	.	.	.	.	.	.					.	.	.	410	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																														.	.								.	.	.	.
Query SS confidence															.	.	.	.	.	.																														.	.								.	.	.	.
Query Sequence		H	G	K	G	D	M	S	L	Y	G	Y	N	Q	.	.	.	.	.	.	S	A	L	V	S	V	G	S	Q	V	R	A	G	Q	P	I	A	L	V	G	S	S	G	G	Q	G	R	P	S	.	.	L	Y	F	E	I	R	R	.	.	.	.	Q	G	Q	A	V	N	P
Query Conservation															.	.	.	.	.	.																														.	.								.	.	.	.
Alig confidence															.	.	.	.	.	.																														.	.								.	.	.	.
Template Conservation
Template Sequence		Y	S	R	G	R	L	T	V	M	T	D	L	E	D	K	N	E	W	K	N	C	I	D	I	T	G	V	R	L	P	T	G	Y	Y	F	G	A	S	A	G	T	G	D	L	S	D	N	H	D	I	I	S	M	K	L	F	Q	L	M	V	E	D	W	T	K	I	E	P
Template Known Secondary structure				T	T									S	S	S	S	S														S	S	B									S	S	S																			G	G	G
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions