Return to main results Retrieve Phyre Job Id

Job DescriptionP37690
Confidence99.95%DateThu Jan 5 11:57:02 GMT 2012
Rank5Aligned Residues120
% Identity31%Templatec2b44A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:glycyl-glycine endopeptidase lytm; PDBTitle: truncated s. aureus lytm, p 32 2 1 crystal form
Resolution1.83 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   298.300.........310.........320.........330.........340..... ....350.........360 .........370.....
Predicted Secondary structure 




































.






.







Query SS confidence 















































.














.














Query Sequence  AFWPVRGPTLHRYGEQLQGELRWKGMVIGASEGTEVKAIADGRVILAD. WLQGYGLVVVVEHGK. GDMSLYGYNQSALVS
Query Conservation     
         
          



    
  
 
   
 
  
 .   
 
  


 

 .   


  
  
 
 
Alig confidence 
















.





























.














.














Template Conservation    


 
 
   

   .    
 



    
  
 
   
 
          
  
 
 
        
  
    
 
Template Sequence  ASWLTSRKQLQPYGQYH. GGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVS
Template Known Secondary structure  TTS

S
T.TSS
S

TT

SSS
SSS
STTSSSSB


Template Predicted Secondary structure 














.

































Template SS confidence 















































































   189190.........200..... ....210.........220.........230.........240.........250.........260.......
 
   376...380.........390.........400........ .410........
Predicted Secondary structure 















....



Query SS confidence 
































. . . .









Query Sequence  VGSQVRAGQPIALVGSSGGQGRPSLYFEIRRQG. . . . QAVNPQPWLG
Query Conservation   

 
  

 

 

 

 
 
  




   
....  


   
 
Alig confidence 
































....









Template Conservation   
  
  
  

 

 

     





   
      


   
 
Template Sequence  AGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSYLQ
Template Known Secondary structure  TT

TT

B

SS

SSSSSSGGG


Template Predicted Secondary structure 



























Template SS confidence 














































   268.270.........280.........290.........300.........310....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions