Job Description P37690 Confidence 92.73% Date Thu Jan 5 11:57:02 GMT 2012 Rank 52 Aligned Residues 256 % Identity 8% Template c1sjjB_ PDB info PDB header:contractile protein Chain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin Resolution 20.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		I	I	Y	A	S	V	L	S	A	G	V	L	L	C	A	F	S	A	H	A	D	E	R	D	Q	L	K	S	I	Q	A	D	I	A	A	K	E	R	A	V	R	Q	K	Q	Q	Q	R	A	S	L	L	A	Q	L	K	K	Q	E	E	A	I	S	E	A	T	R	K	L	R	E	T	Q	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	Q	I	A	A	I	A	Q	E	L	N	E	L	D	Y	Y	D	S	P	S	V	N	A	R	C	Q	K	I	C	D	Q	W	D	N	L	G	A	L	T	Q	K	R	R	E	A	L	E	R	T	E	K	L	L	E	T	I	D	Q	L	Y	L	E	Y	A	K	R	A	A	P	F	N	N	W	M	E	G	A	M	E
Template Known Secondary structure														T	T	T		T	T																																																		T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
													87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	N	T	L	N	Q	L	N	K	Q	I	D	E	M	N	A	S	I	A	K	L	E	Q	Q	K	A	A	Q	E	R	S	L	A	A	Q	L	D	A	A	F	R	Q	G	E	H	T	G	I	Q	L	I	L	S	G	E	E	S	Q	R	G	Q	R	L	Q	A	Y	F	G	Y	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	Q	D	T	F	I	V	H	T	I	E	E	I	Q	G	L	T	T	A	H	E	Q	F	K	A	T	L	P	D	A	D	K	E	R	Q	A	I	L	G	I	H	N	E	V	S	K	I	V	Q	T	Y	H	V	N	M	A	G	T	N	P	Y	T	T	I	T	P	Q	E	I	N	G	K	W	E	H	V	R	Q	L
Template Known Secondary structure			T	T						S	S																	T																								T	T	T			S		S			S	S		S
Template Predicted Secondary structure
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		N	Q	A	R	Q	E	T	I	A	Q	L	K	Q	T	R	E	E	V	A	M	Q	R	A	E	L	E	E	K	Q	S	E	.	.	.	.	Q	Q	T	L	L	Y	E	Q	R	A	Q	Q	A	K	L	T	Q	A	L	N	E	R	K	K	T	L	A	G	L	E	S	S	I	Q	Q	G	Q	Q	Q	L	S	E	L	R	A
Query Conservation																																	.	.	.	.
Alig confidence																																	.	.	.	.
Template Conservation
Template Sequence		V	P	R	R	D	Q	A	L	M	E	E	H	A	R	Q	Q	Q	N	E	R	L	R	K	Q	F	G	A	Q	A	N	V	I	G	P	W	I	Q	T	K	M	E	E	I	G	R	I	S	I	E	M	H	G	T	L	E	D	Q	L	N	H	L	R	Q	Y	E	K	S	I	V	N	Y	K	P	K	I	D	Q	L	E	G
Template Known Secondary structure														T	T																													T	T	S	S	T	T		S	S	S	S	S																		T
Template Predicted Secondary structure
Template SS confidence
		612	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	S	R	L	R	N	S	I	A	R	A	E	A	A	A	K	A	R	A	E	R	E	A	R	E	A	Q	A	V	R	D	R	Q	K	E	A	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	H	Q	Q	I	Q	E	A	L	I	F	D	N	K	H	T	N	Y	T	M	E	H	I	R	V	G	W	E	Q	L	L	T	T	I	A	R	T	I	N
Template Known Secondary structure								T	T	T					S	S		S
Template Predicted Secondary structure
Template SS confidence
		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions