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Job DescriptionP37690
Confidence93.65%DateThu Jan 5 11:57:02 GMT 2012
Rank48Aligned Residues251
% Identity7%Templatec1g8xB_
PDB info PDB header:structural proteinChain: B: PDB Molecule:myosin ii heavy chain fused to alpha-actinin 3; PDBTitle: structure of a genetically engineered molecular motor
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  KPRRFAIRPIIYASVLSAGVLLCAFSAHADERDQLKSIQADIAAKERAVRQKQQQRASLLAQLKKQEEAISEATRKLRET
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Template Sequence  AREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTK
Template Known Secondary structure  T




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   757..760.........770.........780.........790.........800.........810.........820.........830......
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  QNTLNQLNKQIDEMNASIAKLEQQKAAQERSLAAQLDAAFRQGEHTGIQLILSGEESQRGQRLQAYFGYLNQARQETIAQ
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Template Sequence  LRLIKREPFVAPAGLTP. . . . . NEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILK. . . . . KLENWATTKS
Template Known Secondary structure  TTS





TT
S..........TGGG
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   837..840.........850... ......860.........870.........880.........890...... ...900......
 
   166...170.........180.........190.........200.........210...... ...220.........230.........240...
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Query Sequence  LKQTREEVAMQRAELEEKQSEQQTLLYEQRAQQAKLTQALNERKKTLAGLE. . SSIQQGQQQLSELRANESRLRNSIARA
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Template Sequence  VYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETY
Template Known Secondary structure  TGGG

SS

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   907..910.........920.........930.........940.........950.........960.........970.........980......
 
   244.....250.........260......
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Query Sequence  EAAAKARAEREAREAQAVRDRQK
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Template Sequence  KNTLLAELERLQKIEDLHHHHHH
Template Known Secondary structure  SGGGGT
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   987..990.........1000.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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