Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.
Sequence		M	M	K	R	L	I	V	L	V	L	L	A	S	T	L	L	T	G	C	N	T	A	R	G	F	G	E	D	I	K	H	L	G	N	S	I	S	R	A	A	S
Secondary structure
SS confidence
Disorder		?																															?		?				?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2rh3 chain A domain 1 Region: 1 - 29 Aligned: 29 Modelled: 29 Confidence: 25.9% Identity: 24% Fold: Ribbon-helix-helix Superfamily: Ribbon-helix-helix Family: VirC2-like Phyre2 PDB 1pyv chain A Region: 10 - 41 Aligned: 30 Modelled: 32 Confidence: 11.6% Identity: 50% PDB header:hydrolase Chain: A: PDB Molecule:atp synthase beta chain, mitochondrial precursor; PDBTitle: nmr solution structure of the mitochondrial f1b presequence2 peptide from nicotiana plumbaginifolia Phyre2 PDB 1sp8 chain A domain 2 Region: 18 - 38 Aligned: 21 Modelled: 21 Confidence: 9.0% Identity: 38% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 1deb chain A Region: 20 - 36 Aligned: 17 Modelled: 17 Confidence: 7.4% Identity: 35% PDB header:structural protein Chain: A: PDB Molecule:adenomatous polyposis coli protein; PDBTitle: crystal structure of the n-terminal coiled coil domain from2 apc Phyre2 PDB 1nh9 chain A Region: 33 - 39 Aligned: 7 Modelled: 7 Confidence: 6.7% Identity: 43% Fold: IF3-like Superfamily: AlbA-like Family: DNA-binding protein AlbA Phyre2 1 d2rh3a1 2 c1pyvA_ 3 d1sp8a2 4 c1debA_ 5 d1nh9a_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2rh3a1 25.9 24 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:VirC2-like 2 c1pyvA_ 11.6 50 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase beta chain, mitochondrial precursor; PDBTitle: nmr solution structure of the mitochondrial f1b presequence2 peptide from nicotiana plumbaginifolia 3 d1sp8a2 9.0 38 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 4 c1debA_ 7.4 35 PDB header:structural protein Chain: A: PDB Molecule:adenomatous polyposis coli protein; PDBTitle: crystal structure of the n-terminal coiled coil domain from2 apc 5 d1nh9a_ 6.7 43 Fold:IF3-like Superfamily:AlbA-like Family:DNA-binding protein AlbA

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0