BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (41 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P0ADB6 Entericidin A n=91 Tax=Enterobacteriaceae RepID=...    52   4e-06
UniRef50_B0VRY4 Bacteriolytic lipoprotein entericidin B n=11 Tax...    47   2e-04
UniRef50_Q6FE13 Bacteriolytic lipoprotein entericidin B n=3 Tax=...    43   0.002
UniRef50_D0S831 Predicted protein n=3 Tax=Acinetobacter RepID=D0...    41   0.014
UniRef50_B9XKK9 Entericidin EcnAB n=1 Tax=bacterium Ellin514 Rep...    40   0.027
UniRef50_C9Y199 Putative uncharacterized protein n=2 Tax=Cronoba...    39   0.046
UniRef50_A8G8T1 Entericidin EcnAB n=2 Tax=Serratia RepID=A8G8T1_...    38   0.079

>UniRef50_P0ADB6 Entericidin A n=91 Tax=Enterobacteriaceae RepID=ECNA_ECO57
          Length = 41

 Score = 52.3 bits (124), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS
Sbjct: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41


>UniRef50_B0VRY4 Bacteriolytic lipoprotein entericidin B n=11 Tax=Moraxellaceae
          RepID=B0VRY4_ACIBS
          Length = 47

 Score = 46.9 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 30/41 (73%)

Query: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MMK+++V  ++ + +LTGCNT +GFG+D+   G++++  A 
Sbjct: 1  MMKKVLVASVMVAFVLTGCNTLKGFGQDVSKAGDAVTNTAQ 41


>UniRef50_Q6FE13 Bacteriolytic lipoprotein entericidin B n=3 Tax=Proteobacteria
          RepID=Q6FE13_ACIAD
          Length = 47

 Score = 43.4 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 28/41 (68%)

Query: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MMK+++   ++ + +LTGCNT +G G+D+   G++++  A 
Sbjct: 1  MMKKILAASVMVAFVLTGCNTFKGVGKDVSRAGDAVTNTAE 41


>UniRef50_D0S831 Predicted protein n=3 Tax=Acinetobacter RepID=D0S831_ACIJO
          Length = 58

 Score = 40.8 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 2  MKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MK++++  L+   +LTGCNT +G G+D+   GN++S  A 
Sbjct: 11 MKKIVLSSLVMLFVLTGCNTVKGMGKDVSSAGNAVSHTAE 50


>UniRef50_B9XKK9 Entericidin EcnAB n=1 Tax=bacterium Ellin514 RepID=B9XKK9_9BACT
          Length = 44

 Score = 40.0 bits (92), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 4/41 (9%)

Query: 2  MKRLIVLVLLASTLL----TGCNTARGFGEDIKHLGNSISR 38
          MK  +VL+L+A++LL    TGCNTA GFG+D+ + G++I R
Sbjct: 1  MKTRLVLILIATSLLVMAGTGCNTAHGFGKDVSNTGDAIQR 41


>UniRef50_C9Y199 Putative uncharacterized protein n=2 Tax=Cronobacter
          RepID=C9Y199_CROTZ
          Length = 43

 Score = 39.2 bits (90), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 20/24 (83%)

Query: 18 GCNTARGFGEDIKHLGNSISRAAS 41
           CNTARGFGEDI+HLG +I RAA 
Sbjct: 20 ACNTARGFGEDIQHLGGAIERAAK 43


>UniRef50_A8G8T1 Entericidin EcnAB n=2 Tax=Serratia RepID=A8G8T1_SERP5
          Length = 42

 Score = 38.4 bits (88), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 21/24 (87%)

Query: 18 GCNTARGFGEDIKHLGNSISRAAS 41
          GCNT RGFGED++HLG +ISR AS
Sbjct: 19 GCNTFRGFGEDVQHLGGAISRTAS 42


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0ADB6 Entericidin A n=91 Tax=Enterobacteriaceae RepID=...    55   9e-07
UniRef50_B0VRY4 Bacteriolytic lipoprotein entericidin B n=11 Tax...    52   5e-06

Sequences not found previously or not previously below threshold:

UniRef50_Q6FE13 Bacteriolytic lipoprotein entericidin B n=3 Tax=...    46   4e-04
UniRef50_D0S831 Predicted protein n=3 Tax=Acinetobacter RepID=D0...    42   0.006
UniRef50_A5WE31 Entericidin EcnAB n=3 Tax=Gammaproteobacteria Re...    40   0.034

>UniRef50_P0ADB6 Entericidin A n=91 Tax=Enterobacteriaceae RepID=ECNA_ECO57
          Length = 41

 Score = 54.6 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS
Sbjct: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41


>UniRef50_B0VRY4 Bacteriolytic lipoprotein entericidin B n=11 Tax=Moraxellaceae
          RepID=B0VRY4_ACIBS
          Length = 47

 Score = 52.3 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 30/41 (73%)

Query: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MMK+++V  ++ + +LTGCNT +GFG+D+   G++++  A 
Sbjct: 1  MMKKVLVASVMVAFVLTGCNTLKGFGQDVSKAGDAVTNTAQ 41


>UniRef50_Q6FE13 Bacteriolytic lipoprotein entericidin B n=3 Tax=Proteobacteria
          RepID=Q6FE13_ACIAD
          Length = 47

 Score = 46.1 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 28/41 (68%)

Query: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MMK+++   ++ + +LTGCNT +G G+D+   G++++  A 
Sbjct: 1  MMKKILAASVMVAFVLTGCNTFKGVGKDVSRAGDAVTNTAE 41


>UniRef50_D0S831 Predicted protein n=3 Tax=Acinetobacter RepID=D0S831_ACIJO
          Length = 58

 Score = 41.9 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 2  MKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MK++++  L+   +LTGCNT +G G+D+   GN++S  A 
Sbjct: 11 MKKIVLSSLVMLFVLTGCNTVKGMGKDVSSAGNAVSHTAE 50


>UniRef50_A5WE31 Entericidin EcnAB n=3 Tax=Gammaproteobacteria RepID=A5WE31_PSYWF
          Length = 46

 Score = 39.6 bits (91), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 2  MKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAA 40
          MK+L    L A  +L+GCNT +G G+D+   G  ++  A
Sbjct: 1  MKKLAFASLTALVVLSGCNTFKGLGQDVSKAGEGVTNTA 39


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0ADB6 Entericidin A n=91 Tax=Enterobacteriaceae RepID=...    52   7e-06
UniRef50_B0VRY4 Bacteriolytic lipoprotein entericidin B n=11 Tax...    51   1e-05
UniRef50_Q6FE13 Bacteriolytic lipoprotein entericidin B n=3 Tax=...    50   2e-05

Sequences not found previously or not previously below threshold:

UniRef50_D0S831 Predicted protein n=3 Tax=Acinetobacter RepID=D0...    43   0.003
UniRef50_A5WE31 Entericidin EcnAB n=3 Tax=Gammaproteobacteria Re...    40   0.020


CONVERGED!
>UniRef50_P0ADB6 Entericidin A n=91 Tax=Enterobacteriaceae RepID=ECNA_ECO57
          Length = 41

 Score = 51.5 bits (122), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS
Sbjct: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41


>UniRef50_B0VRY4 Bacteriolytic lipoprotein entericidin B n=11 Tax=Moraxellaceae
          RepID=B0VRY4_ACIBS
          Length = 47

 Score = 51.1 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 30/41 (73%)

Query: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MMK+++V  ++ + +LTGCNT +GFG+D+   G++++  A 
Sbjct: 1  MMKKVLVASVMVAFVLTGCNTLKGFGQDVSKAGDAVTNTAQ 41


>UniRef50_Q6FE13 Bacteriolytic lipoprotein entericidin B n=3 Tax=Proteobacteria
          RepID=Q6FE13_ACIAD
          Length = 47

 Score = 50.0 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 28/41 (68%)

Query: 1  MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MMK+++   ++ + +LTGCNT +G G+D+   G++++  A 
Sbjct: 1  MMKKILAASVMVAFVLTGCNTFKGVGKDVSRAGDAVTNTAE 41


>UniRef50_D0S831 Predicted protein n=3 Tax=Acinetobacter RepID=D0S831_ACIJO
          Length = 58

 Score = 43.0 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 2  MKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MK++++  L+   +LTGCNT +G G+D+   GN++S  A 
Sbjct: 11 MKKIVLSSLVMLFVLTGCNTVKGMGKDVSSAGNAVSHTAE 50


>UniRef50_A5WE31 Entericidin EcnAB n=3 Tax=Gammaproteobacteria RepID=A5WE31_PSYWF
          Length = 46

 Score = 40.3 bits (93), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 2  MKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
          MK+L    L A  +L+GCNT +G G+D+   G  ++  A 
Sbjct: 1  MKKLAFASLTALVVLSGCNTFKGLGQDVSKAGEGVTNTAD 40


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.330    0.143    0.377 

Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,418,568
Number of Sequences: 3077464
Number of extensions: 3704535
Number of successful extensions: 26724
Number of sequences better than 1.0e-01: 50
Number of HSP's better than  0.1 without gapping: 113
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 26611
Number of HSP's gapped (non-prelim): 148
length of query: 41
length of database: 1,040,396,356
effective HSP length: 15
effective length of query: 26
effective length of database: 994,234,396
effective search space: 25850094296
effective search space used: 25850094296
T: 11
A: 40
X1: 16 ( 7.6 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 87 (38.0 bits)
