Job Description P0A6D7 Confidence 99.42% Date Thu Jan 5 11:02:54 GMT 2012 Rank 94 Aligned Residues 163 % Identity 13% Template c2w0sB_ PDB info PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate Resolution 2.92 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.														.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	K	R	N	I	F	L	V	G	P	M	G	A	G	K	S	T	I	G	R	Q	L	A	Q	Q	L	N	M	E	F	Y	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	E	I	E	K	R	T	G	A	D	V	G	W	V	F	D	L	E	G	E	E	G	F	R	D	R	E	E	K	V	I	N
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	G	A	L	I	V	F	E	G	L	D	K	S	G	K	T	T	Q	C	M	N	I	M	E	S	I	P	A	N	T	I	K	Y	L	N	F	P	Q	R	S	T	V	T	G	K	M	I	D	D	Y	L	T	R	K	K	T	Y	N	D	H	I	V	N	L	L	F	C	A	N	R	W	E	F	A	S	F	I	Q	E
Template Known Secondary structure												S	T	T	S													S		T	T	S						S	S		T	T	S											T	T	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.													.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	T	E	K	Q	G	I	V	L	A	T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	G	S	V	K	S	R	E	T	R	N	R	L	S	A	R	G	V	V	V	Y	L	E	T	T	I	E	K	Q	L	A	R	T	Q	R	D	K	K	R	P	L	L	H	V	E	T	P	P	R	E	V	L	E	A	L
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.
Template Sequence		Q	L	E	Q	G	I	T	L	I	V	D	R	Y	A	F	S	G	V	A	Y	A	A	A	K	G	A	S	M	T	L	S	K	S	Y	E	S	G	L	P	K	P	D	L	V	I	F	L	E	S	G	S	K	E	I	N	R	N	V	G	E	E	.	.	.	.	.	.	.	.	I	Y	E	D	V	T	F	Q	Q	K	V
Template Known Secondary structure					T	T							S												T	T											T	T	S				S													T	T		B		S	S	.	.	.	.	.	.	.	.	T	T		B
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.									.	.	.	.	.	.	.	150	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		A	N	E	R	N	P	L	Y	E	E	I	A	D	.	V	T	I	R	T	D	D	Q	S	A	K	V	V	A	N	Q	I	I	H	M	L	E	S
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		L	Q	E	Y	K	K	M	I	E	E	G	D	I	H	W	Q	I	I	S	S	E	F	E	E	D	V	K	K	E	L	I	K	N	I	V	I	E
Template Known Secondary structure											T		S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions