Job Description P0A6D7 Confidence 97.44% Date Thu Jan 5 11:02:54 GMT 2012 Rank 254 Aligned Residues 91 % Identity 15% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.								.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.									.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.									.	.	.	.	.	.	.
Query Sequence		A	E	K	R	N	I	F	L	V	G	P	M	G	A	G	K	S	T	I	G	R	Q	L	A	Q	Q	L	.	.	.	.	.	N	M	E	F	Y	D	S	D	.	.	.	.	.	.	.	Q	E	I	E	K	R	T	G	A	D	V	G	W	V	F	D	L	E	G	E	E	G	F	R	D	R	E	E	K	V	I	N	E
Query Conservation																													.	.	.	.	.									.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.									.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K
Template Known Secondary structure			S	S								S	T	T	S	S															T	T											S	S	S														T										S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		L	T	E	K	Q	G	.	.	I	V	L	A	T	G	G	G	S	V	K	S	R	E	T	R	N
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E
Template Known Secondary structure					T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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