Job Description P0A6D7 Confidence 98.20% Date Thu Jan 5 11:02:54 GMT 2012 Rank 167 Aligned Residues 167 % Identity 14% Template c1qhiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (thymidine kinase); PDBTitle: herpes simplex virus type-i thymidine kinase complexed with2 a novel non-substrate inhibitor, 9-(4-hydroxybutyl)-n2-3 phenylguanine Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																					.	.	.	.	.	60
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	E	K	R	N	I	F	L	V	G	P	M	G	A	G	K	S	T	I	G	R	Q	L	A	Q	Q	L	N	M	E	F	Y	D	S	D	Q	E	I	E	K	R	T	G	A	D	V	G	W	V	F	D	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	E	G	F	R
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.
Template Sequence		M	P	T	L	L	R	V	Y	I	D	G	P	H	G	M	G	K	T	T	T	T	Q	L	L	D	I	V	Y	V	P	E	P	M	.	.	.	T	Y	W	R	V	L	G	A	S	E	T	I	A	N	I	Y	T	T	Q	H	R	L	D	Q	G	E	I	S	A	G	D	A	A	V	V	M	T	S	A	Q	I	T	M	G
Template Known Secondary structure												S	S	T	T	S	S						T	T											.	.	.					T	T	S	S	S															T	T	S	S
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.				.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		61	.	.	.	.	.	.	.	.	70	.	.								.	.	.	.	.	.	.	80	.																.	.	.	.	.	.	.	.	90	.	.	.	.	.							.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure														.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query Sequence		D	R	E	E	K	V	I	N	E	L	T	E	.	.	.	.	.	.	.	K	Q	G	I	V	L	A	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	S	V	K	S	R	E	T	R	N	R	L	S	.	.	.	.	.	.	A	R	G	V	V	V	Y	L	E	T	T	I	E	K	Q	L	A
Query Conservation														.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation
Template Sequence		M	P	Y	A	V	T	D	A	V	L	A	P	H	I	G	G	E	A	P	P	A	L	T	L	I	F	D	R	H	P	I	A	A	L	L	C	Y	P	A	A	R	Y	L	M	G	S	M	T	P	Q	A	V	L	A	F	V	A	L	I	P	P	T	L	P	G	T	N	I	V	L	G	A	L	P	E	D	R	H	I	D
Template Known Secondary structure												G	G	G								S														T								T	T	T	S	S											T						T	T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	Q	R	D	K	K	R	P	L	L	H	V	E	T	P	P	R	E	V	L	E	A	L	A	N	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		R	L	A	K	R	Q	R	P	G	E	R	.	L	D	L	A	M	L	A	A	I	R	R	V	Y	G	L	L	A	N	T	V	R	Y	L	Q	C	G	G	S	W	R	E	D	W	G	Q	L	S	P	R	P	H	I	G	D	T	L	F	T	L	F	R	A	P	E	L	L	A	P	N	G	D	L	Y	N	V	F	A	W
Template Known Secondary structure									T	T			.																									T	T							G	G	G	G						G	G	G	S	G	G	G	G	G			G	G	G	B		T	T	S		B
Template Predicted Secondary structure													.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
							141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	N	P	L	Y	E	E	I	A	D	V	T	I	R	T	D	D	Q	S	A	K	V	V	A	N	Q	I	I	H	M	L	E	S
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																	.
Template Conservation																							.
Template Sequence		A	L	D	V	L	A	K	R	L	R	S	M	H	V	F	I	L	D	Y	D	Q	.	S	P	A	G	C	R	D	A	L	L	Q	L	T	S	G
Template Known Secondary structure												T									S	S	.													G	G	G
Template Predicted Secondary structure																							.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions