|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | |
|
|
|
|
. | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
Query Sequence |   |
R | P | N | F | L | F | V | M | T | D | T | Q | A | T | N | M | V | G | C | Y | S | G | K | P | L | N | T | Q | N | I | D | S | L | A | A | E | G | I | R | F | N | S | A | Y | T | C | S | P | V | C | T | P | A | R | A | G | L | F | T | G | I | Y | A | N | Q | S | G | P | W | T | N | N | V | . |
. |
. |
. |
. |
A | P |
Query Conservation |   |
|
|
|
|
|   |
|   |   |
|   |
|
|   |
|   |
|   |   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|
|   |   |
|
|   |
|   |
|   |   |   |   |   |
|   |
|   |
|
|
|   |
|
|   |
|
|   |
|
|   |   |   |
|   |   |   |
|   |   | . | . | . | . | . |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
Template Conservation |   |
|
|
|
|
|   |
|   |   |
|   |   |   |   |
|   |
|   |   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|
|   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |
|   |
|
|   |   |
|
|
|
|
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
Q | P | N | L | V | I | I | M | A | D | D | L | G | Y | G | D | L | A | T | Y | G | H | Q | I | V | K | T | P | N | I | D | R | L | A | Q | E | G | V | K | F | T | D | Y | Y | A | P | A | P | L | S | S | P | S | R | A | G | L | L | T | G | R | M | P | F | R | T | G | I | R | S | W | I | P | S | G | K | D | V | A | L |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  | S | S |
|
| T | T | S | S | G | G | G | T |
| S | S |
|
|
|  |  |  |  |  |  |  |  | T | S |  |  |  | S | S |  |  |
| S | S | S | S |  |  |  |  |  |  |  |  |  |  | T | S |
| G | G | G | G | T |
| S | S |
|
|
| T | T | S | S |
|
| S |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
42 | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
  |
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | |
|
|
|
|
. | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | K | N | I | S | T | M | G | R | Y | F | K | D | A | G | Y | H | T | C | Y | I | G | K | W | H | L | D | G | H | D | Y | F | G | T | G | E | C | P | P | E | W | D | A | D | Y | W | F | D | G | A | N | Y | L | S | E | L | T | E | . |
. |
. |
. |
. |
K | E | I | S | L | W | R | N | G | L | N | S | V | E | D | L | Q |
Query Conservation |   |
  |   |   |   |   |
|
|   |   |   |
|
|   |   |
|
|   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|   |   |   |
|   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
G | R | N | E | L | T | I | A | N | L | L | K | A | Q | G | Y | D | T | A | M | M | G | K | L | H | L | N | A | G | G | D | R | T | D | Q | P | Q | A | Q | D | M | G | F | D | Y | S | L | A | N | T | A | G | F | V | T | D | A | T | L | D | N | A | K | E | R | P | R | Y | G | M | V | Y | P | T | G | W | L | R | N | G |
Template Known Secondary structure |   |
| T | T |
|
|
|  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |  |  |
|
| S | S | S |
| T | T |
| T | T | S |
|
| T | T | T | T | T |
| S |  |  |  |  |  |
| S | S | S |
|
|
|  |  |  |  | T |
|
| S | S | S |
| B |
|
|
|
|
|
| S |
|  |  | T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
122 | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . |
  |
  |   |
153 | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | N | H | I | D | E | T | F | T | W | A | H | R | I | S | N | R | A | V | D | F | L | Q | Q | P | A | R | A | D | E | P | F | L | M | V | V | S | Y | D | E | P | H | H | P | F | T | C | P | V | E | Y | L | E | K | Y | A | D | F | Y | Y | E | L | G | E | K | A | Q | D | D | L | A | N | K | P | E | H | H | R | L | W |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   | . |   |   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
Q | P | T | P | R | A | D | K | M | S | G | E | Y | V | S | S | E | V | V | N | W | L | D | . |
N | K | K | D | S | K | P | F | F | L | Y | V | A | F | T | E | V | H | S | P | L | A | S | P | K | K | Y | L | D | M | Y | S | Q | Y | M | S | A | Y | Q | K | Q | H | P | D | L | F | Y | G | D | W | A | D | K | P | W | R |
Template Known Secondary structure |   |
 |  |
|
|
|
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | T |
|
| S | S |
|
|  |  |  |  |  |  |
|
| T | T | S | S | S |
|
|
|
|  |  |  |  |  | T | T | G | G | G | B |
|  |  |  |  |  | S | T | T | B |
| G | G | G |
| T | T | S |
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | |
. | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
  |
  |   |
233 | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | |
. | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
A | Q | A | M | P | S | P | V | G | D | D | G | L | Y | H | H | P | L | Y | F | A | C | N | D | F | V | D | D | Q | I | G | R | V | I | N | A | L | T | P | E | Q | R | . |
E | N | T | W | V | I | Y | T | S | D | H | G | E | M | M | G | A | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | L | I | S | K | G |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|
|   |
|
|   |   |
|   |   |   |
|
| . |
|
|
|
|
|
|   |
|
|
|
|
|   |   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |   |   |
Alig confidence |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|
|   |
|
|   |   |
|   |   |   |
|   |   |
|
|
|
|
|
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | G | E | Y | Y | A | N | I | S | Y | L | D | A | Q | V | G | K | V | L | D | K | I | K | A | M | G | E | E | D | N | T | I | V | I | F | T | S | D | N | G | P | V | T | R | E | A | R | K | V | Y | E | L | N | L | A | G | E | T | D | G | L | R | G | R | K |
Template Known Secondary structure |   |
B | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| G | G | G |  |  |  |  |  |  |  | S | S |
|
|
|
| S |
|
|
| S | G | G | G | T | T |
|
|
|
|
| T | T |
| S |
|
| T |
Template Predicted Secondary structure |   |
 | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
281 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . |
  |
  |   |
299 | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | |
|
. | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | |
|
. | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | |
. | 370 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |
|
|
|  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  | . |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Query Sequence |   |
A | A | M | Y | D | D | I | T | R | I | P | L | I | I | R | S | P | Q | G | . |
. |
E | R | R | Q | V | D | T | P | V | S | H | I | D | L | L | P | T | M | M | A | L | A | D | I | E | K | P | E | I | . |
. |
L | P | G | E | N | I | L | A | V | K | E | P | R | G | V | M | V | E | F | N | R | Y | . |
E | I | E | H | D |
Query Conservation |   |
  |   |   |   |
|   |   |   |   |
|
|
|
|
|   |   |
|   |   | . | . |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|
|
|
|   |
|   |
|
|   |   |
|   |   | . | . |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |   |   |
|
|
|   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|
|
|   |
|   |
|   |   |   |
|   |   |   |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
D | N | L | W | E | G | G | I | R | V | P | A | I | I | K | Y | G | K | H | L | P | Q | G | M | V | S | D | T | P | V | Y | G | L | D | W | M | P | T | L | A | K | M | M | N | F | K | L | P | T | D | R | T | F | D | G | E | S | L | V | P | V | L | E | Q | K | A | L | K | R | E | K | P | L | I | F | G | I | D | M | P |
Template Known Secondary structure |   |
T |
|
| S |  |  |  |  | B |
|
|  |  |  |  |  | T | T | S | S |
| T | T |  |  |  |
| S |
|  |  | G | G | G |  |  |  |  |  |  |  |  |  | T |
|
|
|
| S | S | S |
|
|
|
|
|
|
|  |  |  |  | T | T |
|
|
|
|
| S | S |
|  |  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
347 | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . |
  |
  |   |
374 | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | |
. | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |
| . |
|
|
|
|  |  |
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | F | G | G | F | I | P | V | R | C | W | V | T | D | D | F | K | L | V | L | N | . |
L | F | T | S | D | E | L | Y | D | R | R | N | D | P | N | E | M | H | N | L | I | D | D | I | R | F | A | D | V | R | S | K | M | H | D | A | L | L | D | Y | M | D | K | I | R | D | P | F | R | S | Y | Q | W | S | L | R | P |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |
|   |   | . |   |   |   |   |   |
|
|
|
|
|   |   |
|
|   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|   |   |
|
|   |
|   |   |
|
|
|   | . | . |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
F | Q | D | D | P | T | D | E | W | A | I | R | D | G | D | W | K | M | I | I | D | R | N | N | K | P | K | Y | L | Y | N | L | K | S | D | R | Y | E | T | L | N | L | I | G | . |
. |
K | K | P | D | I | E | K | Q | M | Y | G | K | F | L | K | Y | K | T | D | I | D | N | D | S | L | M | K | A | R | G | D | K | P |
Template Known Secondary structure |   |
S |
| S | S |
|
|
|
|  |  |  |  |  | T | T |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  | T | T | T |
| T | T | S |
| S |
|
| T | T | . | . | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  | T | T |
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|  |  |  |
|  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
427 | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | |
|
. | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . |
  |