Job Description P31447 Confidence 100.00% Date Thu Jan 5 11:47:37 GMT 2012 Rank 12 Aligned Residues 296 % Identity 18% Template c2zktB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.												50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	R	P	N	F	L	F	V	M	T	D	T	Q	A	T	N	M	V	G	C	Y	S	G	K	.	.	.	.	P	L	N	T	Q	N	I	D	S	L	A	A	E	G	I	R	F	N	S	A	Y	T	C	S	.	.	.	.	.	.	.	.	.	.	.	P	V	C	T	P	A	R	A	G	L	F	T	G	I	Y	A
Query Conservation																											.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																						.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		L	K	R	.	K	G	L	L	I	I	L	D	G	L	G	D	R	P	I	K	E	L	N	G	L	T	P	L	E	Y	A	N	T	P	N	M	D	K	L	A	E	I	G	I	L	G	Q	Q	D	P	I	K	P	G	Q	P	A	G	S	D	T	A	H	L	S	I	F	G	Y	D	P	Y	E	T	Y	R	G	R	G	F
Template Known Secondary structure					.								T	T	B	B				B	G	G	G	T	T	B						S												S							S	S	S	T	T													T	T										S
Template Predicted Secondary structure					.
Template SS confidence
		3	.	.		.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		66	.	.	.																			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Q	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	W	T	N	N	V	A	P	G	K	N	I	S	T	M	G	R	Y	F	K	D	A	G	Y	H	T	C	Y	I	G	K	W	H	L	D	G	H	D	Y	F	G	T	G	E	C	P	P	E	W	D	A	D	Y	W	F	D	G	A
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		F	E	A	L	G	V	G	L	D	L	S	K	D	D	L	A	F	R	V	N	F	A	T	L	E	N	A	R	A	I	Q	E	E	V	D	I	G	V	D	F	I	F	K	T	G	H	R	A	V	L	V	L	K	G	M	S	R	G	Y	K	V	G	D	N	D	P	H	E	A	G	K	P	P	S	K	K	V	.	.	.
Template Known Secondary structure							T	T					T	T																																		S	S								S	T	T							T	T		G	G	G								.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.
Query Sequence		N	Y	L	S	E	L	T	E	K	E	I	S	L	W	R	N	G	L	N	S	V	E	D	L	Q	A	N	H	I	D	E	T	F	T	W	A	H	R	I	S	N	R	A	V	D	F	L	Q	Q	P	.	.	.	.	.	.	A	R	A	D	E	P	F	L	M	V	V	S	Y	D	E	P	H	H	P	F	T	C	P	V
Query Conservation																																																				.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	I	L	E	E	F	V	K	K	A	Q	E	V	L	E	K	H	P	I	N	E	R	R	R	K	E	G	K	P	I	A	N	Y	L	L	I	R	G	A	G	T	Y	P	N	I	P	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T	S									T	T															S				S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.										.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.																						.	.	250	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Y	L	E	K	Y	A	D	F	Y	Y	E	L	G	E	K	A	.	.	.	.	.	.	.	.	.	Q	D	D	L	A	N	K	P	E	H	H	R	L	W	A	Q	A	M	P	S	P	V	G	D	D	G	L	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	L	Y
Query Conservation																			.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	F	T	E	Q	W	K	V	K	A	A	G	V	I	A	V	A	L	V	K	G	V	A	R	A	V	G	F	D	V	Y	T	P	E	G	A	T	G	E	Y	N	T	N	E	M	A	K	A	K	K	A	V	E	L	L	K	D	Y	D	F	V	F	L	H	F	K	P	T	D	A	A	G	H	D	N	K	P	K	L	K
Template Known Secondary structure								T									S										T	T							T	T			S	S	T	T															T	T		S															T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																					.	.																																							.	.	.	.	.
Query SS confidence																																					.	.																																							.	.	.	.	.
Query Sequence		F	A	C	N	D	F	V	D	D	Q	I	G	R	V	I	N	A	L	T	P	E	Q	R	E	N	T	W	V	I	Y	T	S	D	H	G	.	.	E	M	M	G	A	H	K	L	I	S	K	G	A	A	M	Y	D	D	I	T	R	I	P	L	I	I	R	S	P	Q	G	E	R	R	Q	V	D	T	.	.	.	.	.
Query Conservation																																					.	.																																							.	.	.	.	.
Alig confidence																					.	.	.														.	.							.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																					.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	L	I	E	R	A	D	R	M	I	G	Y	I	L	D	H	V	D	.	.	.	L	E	E	V	V	I	A	I	T	G	D	H	S	T	P	C	E	V	M	N	H	.	.	.	.	.	.	.	.	.	.	.	S	G	D	P	V	P	L	L	I	A	G	G	G	V	R	T	D	D	T	K	R	F	G	E	R	E
Template Known Secondary structure																	T	T			.	.	.	T	T	T								S	S	B			T	T	T	T	S		.	.	.	.	.	.	.	.	.	.	.	B										S	T	T					S			S		S
Template Predicted Secondary structure																					.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.												.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
									325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	P	V	S	H	I	D	L	L	P	T	M	M	A	L	A	D	I	E	K	P	E	I
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	M	K	G	G	L	G	R	I	R	G	H	D	I	V	P	I	M	M	D	L	M	N	R	S	E	K	F	G
Template Known Secondary structure			T	T		T	T					G	G	G									T	T
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions