Return to main results Retrieve Phyre Job Id

Job DescriptionP31447
Confidence100.00%DateThu Jan 5 11:47:37 GMT 2012
Rank14Aligned Residues260
% Identity24%Templatec2gsoB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50 .........60.........70.........
Predicted Secondary structure 
























.
















..
Query SS confidence 















































.




























. .
Query Sequence  RPNFLFVMTDTQATNMVGCYSGKPLNTQNIDSLAAEGIRFNSAYTCSP. VCTPARAGLFTGIYANQSGPWTNNVAPGK. .
Query Conservation 




 
  
 

 
 
   
     




 

  

 
 
     
. 
 


 

 

 

   
   
      ..
Alig confidence 
















.....

























.




























..
Template Conservation 

 

 
  
 

 
 
.....    




 

  
  
    
  
  
 


 




  
   

           
Template Sequence  PHALLLISIDGLRADML. . . . . DRGITPNLSHLAREGVRARWMAPSYPSLTFPNHYTLVTGLRPDHHGIVHNSMRDPTLG
Template Known Secondary structure 

TT

GGGG.....SSSS
SS


SS
S


S

SSSTTT
Template Predicted Secondary structure 





.....

































Template SS confidence 















































































   45....50.........60. ........70.........80.........90.........100.........110.........
 
   80.........90.........100.........110.........120.........130.........140...
Predicted Secondary structure  ................


















































Query SS confidence  . . . . . . . . . . . . . . . .































































Query Sequence  . . . . . . . . . . . . . . . . NISTMGRYFKDAGYHTCYIGKWHLDGHDYFGTGECPPEWDADYWFDGANYLSELTEKEISLWRN
Query Conservation  ................   

   

  

 
   

 
                  
                      
Alig confidence  ................
























.......................................
Template Conservation                              
            .......................................
Template Sequence  GFWLSKSEAVGDARWWGGEPVWVGVENTGQHAATWSWPGSE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
TT
T
GGG

S

TT
SS
TTTT.......................................
Template Predicted Secondary structure 


























.......................................
Template SS confidence 















































































   120.........130.........140.........150.........160
 
   144.....150.........160.........170.........180.........190.........200.........210.........220...
Predicted Secondary structure 




















































Query SS confidence 















































































Query Sequence  GLNSVEDLQANHIDETFTWAHRISNRAVDFLQQPARADEPFLMVVSYDEPHHPFTCPVEYLEKYADFYYELGEKAQDDLA
Query Conservation                            
   
        



       
 
                           
Alig confidence 
































.




















.........................
Template Conservation                                
  .                     .........................
Template Sequence  AAIKGVRPSQWRHYQKGVRLDTRVDAVRGWLAT. DGAQRNRLVTLYFEHVDEAGH. . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
BTTB

SB




TT


.
GGG

.........................
Template Predicted Secondary structure 


















.















.........................
Template SS confidence 















































































   161........170.........180.........190... ......200.........210....
 
   224.....230.........240.........250.........260.........270... ......280......
Predicted Secondary structure 















.






................
Query SS confidence 

















































.












. . . . . . . . . . . . . . . .
Query Sequence  NKPEHHRLWAQAMPSPVGDDGLYHHPLYFACNDFVDDQIGRVINALTPEQ. RENTWVIYTSDHG. . . . . . . . . . . . . . . .
Query Conservation                             
   
   
  

 

  
   
.






 




................
Alig confidence  ...................






























.












................
Template Conservation  ...................                                           
                 
Template Sequence  . . . . . . . . . . . . . . . . . . . DHGPESRQYADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMAEVAPGHAISVEDIA
Template Known Secondary structure  ...................
TTST
GGG
S



TT
S
Template Predicted Secondary structure  ...................
























Template SS confidence 















































































   215....220.........230.........240.........250.........260.........270.....
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                       
   
 

   
       
      
Template Sequence  PPQIATAITDGQVIGFEPLPGQQAAAEASVLGAHDHYDCWRKAELPARWQYGSHPRIPSLVCQMHEGWDALFPDKLAKRA
Template Known Secondary structure 
TTT


BS
TT
STTGGGS
GGG

S
STTS
S
TT

S
Template Predicted Secondary structure 



































Template SS confidence 















































































   276...280.........290.........300.........310.........320.........330.........340.........350.....
 
   287..290.........300.........310.........320.........330.........340.........350 .......
Predicted Secondary structure  ..







































..


Query SS confidence  . .































































. .






Query Sequence  . . EMMGAHKLISKGAAMYDDITRIPLIIRSPQGERRQVDTPVSHIDLLPTMMALADIEKPEILPGE. . NILAVKE
Query Conservation  ..   
  
         
    




  
           
 


 



 
 

  
    
 ..

     
Alig confidence  ..






.....














































.



..






Template Conservation   
   
 

.....    
    




  
 
  
     
  


 



 
 

    . 

   



 
 
Template Sequence  QRGTRGSHG. . . . . YDPALPSMRAVFLAQGPDLAQGKTLPGFDNVDVYALMSRLLGIPAAP. NDGNPATLLPALR
Template Known Secondary structure 

S


.....S
TTSGGG
B
STTB
SS

GGGTT



S.
SS
TTTTGGGB
Template Predicted Secondary structure 








.....


























.





Template SS confidence 










































































   356...360.... .....370.........380.........390.........400.........410. ........420....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions