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Job DescriptionQ46925
Confidence99.94%DateThu Jan 5 12:35:54 GMT 2012
Rank120Aligned Residues349
% Identity13%Templatec1ynuA_
PDB info PDB header:lyaseChain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase; PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40..... ....50.........60.........70....... ..80......
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Query Sequence  QDAGVYLDSAATALKPEAVVEATQQFYSL. . . SAGNVHRSQFAEAQRLTARYEAAREKVAQLLN. . . . . . . APDDKTIVW
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Template Sequence  TNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVL
Template Known Secondary structure  TTSB
SS



TT
TTGGGTTT



TT

TTTSS


GGG
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   37..40.........50.........60.........70.........80.........90.........100.........110......
 
   87..90.........100.........110.........120.........130.........140.........150......... 160
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Query Sequence  TRGTTESINMVAQCYARPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITP. . . . . . R
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Template Sequence  TAGATSANETFIFCL. . . . ADPGEAVLIPTPYYPGFDRDLKWRT. GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLR
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TT
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TTTTTTT.




GGGTT


TT

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   117..120.........130. ........140.........150...... ...160.........170.........180.........190.
 
   161........170........ .180.........190.........200........ .210.........220......
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Query Sequence  SRILALGQMSNVTGGCPD. . . LARAITFAHSAGMVVMVDGAQGAVHFPADV. . . . . . . . . . . QQLDIDFYAFSGHKLYGP
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Template Sequence  VKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDSEVWQRVHVVYSLSKDLGL
Template Known Secondary structure  SS
TTT




T

TTGGG

SSS



TT


GGGGSSSSS

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   192.......200.........210.........220.........230.........240.........250.........260.........270.
 
   227. .230.........240.........250.........260.........270.........280.........290.........300....
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Query Sequence  TG. . IGVLYGKSELLEAMSPWLGGGKMVHEVSFDGFTTQSAPWKLEAGTPNVAGVIGLSAALEWLADYDINQAESWSRSL
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Template Sequence  PGFRVGAIYSNDDMVVAAATKM. . . . . . . . . . . . . . . . . . . . SSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQR
Template Known Secondary structure  GGG
S
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TT
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   278.280.........290......... 300.........310.........320.........330.......
 
   305....310.........320.........330..... ....340........ .350.........360.........370......
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Query Sequence  ATLAEDALAKRPGFRSFRCQDSSLLAFDFAG. . . . . . . VHHSDMVTLLAEY. GIALRAGQHCAQPLLAELGVTGTLRASF
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Template Sequence  QKKLVSGLQKS. GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT. . . . . . EPGWFRVCF
Template Known Secondary structure  TT.T




SSS
GGG
SSSSTT

TTTTT
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   338.340........ .350.........360.........370.........380.........390.........400. ........410
 
   377..380.........390........
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Query Sequence  APYNTKSDVDALVNAVDRALEL
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Template Sequence  A. NLPERTLDLAMQRLKAFVGE
Template Known Secondary structure  S.SS
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   411 ........420.........430.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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