120 c1ynuA_ Probab=99.94   E-value=1.5e-24  Score=166.63  Aligned_columns=349  Identities=13%

Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHH---HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-------CCCHHEEEE
Q ss_conf             88739953788888898999999999987---37887753546779999999999999999847-------194002999
Q batch____        17 QDAGVYLDSAATALKPEAVVEATQQFYSL---SAGNVHRSQFAEAQRLTARYEAAREKVAQLLN-------APDDKTIVW   86 (401)
Q Consensus        17 ~~~~iyld~~~~~~~~~~v~~a~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~r~~lA~~~g-------~~~~~~i~~   86 (401)
                      +++.|.|..+...+....+.+.+.+....   ............++.......++|+.+|++++       --++++|++
T Consensus        27 ~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~~~~~~~~~e~I~i  106 (417)
T c1ynuA_          27 TNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVL  106 (417)
T ss_dssp             TTSBEECSSCCCCTTHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEE
T ss_pred             CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHEEE
T ss_conf             68858886788776621172664210379999975532244440799867998999999999998608999888556788


Q ss_pred             ECCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCC------C
Q ss_conf             6988999999999753124675512430367513568999876552694688644878766387899863245------7
Q batch____        87 TRGTTESINMVAQCYARPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITP------R  160 (401)
Q Consensus        87 t~g~t~a~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~  160 (401)
                      |+|+++++.++++.+    .+++|.|+++.+.|+.......... ...+..+..+.+..+.+|++.++.....      +
T Consensus       107 t~G~~~al~~~~~~l----~~~gd~Vlv~~P~y~~~~~~~~~~~-g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~  181 (417)
T c1ynuA_         107 TAGATSANETFIFCL----ADPGEAVLIPTPYYPGFDRDLKWRT-GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLR  181 (417)
T ss_dssp             EEHHHHHHHHHHHHH----CCTTCEEEEESSCCTTHHHHTTTTT-CCEEEEECCCGGGTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             ECCHHHHHHHHHHHH----CCCCCEEEEECCCCHHHHHHHHHHC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             088899999999985----3789889985897278899999818-98499974384224466988999999743321698


Q ss_pred             CCEEECCCCCCCCCCCCH---HHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCEEEEEECCCCCCC
Q ss_conf             730000122456643210---367776410122223321110000133663-----------224720799722336677
Q batch____       161 SRILALGQMSNVTGGCPD---LARAITFAHSAGMVVMVDGAQGAVHFPADV-----------QQLDIDFYAFSGHKLYGP  226 (401)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~~~~~~  226 (401)
                      +..+...+++||++...+   ...+..+++.++.+++.|.++.........           ......+.+.|.+|.++.
T Consensus       182 ~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~~~iI~De~y~~l~~~~~~~~s~~~~~~~~~~~~~~i~i~S~SK~~~~  261 (417)
T c1ynuA_         182 VKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDSEVWQRVHVVYSLSKDLGL  261 (417)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTCCCGGGGEEEEEESSSSSCC
T ss_pred             EEEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCHHHHHHCCCCCCCEEEEECCHHHHCC
T ss_conf             08999425788841432599999999998755918999678720002887778846643115668988999406055203


Q ss_pred             CC--CEEEEECHHHHHHHCHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             75--0799986889952012001665555322001110111112567881166776556589987642179999999863
Q batch____       227 TG--IGVLYGKSELLEAMSPWLGGGKMVHEVSFDGFTTQSAPWKLEAGTPNVAGVIGLSAALEWLADYDINQAESWSRSL  304 (401)
Q Consensus       227 ~g--~g~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (401)
                      +|  .|+++.++..+.......                    .............+..........+......++..+..
T Consensus       262 ~G~RiG~i~~~~~~i~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  321 (417)
T c1ynuA_         262 PGFRVGAIYSNDDMVVAAATKM--------------------SSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQR  321 (417)
T ss_dssp             GGGCEEEEEESCHHHHHHHHHH--------------------HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHEEEEECHHHHHHHHHHH--------------------HHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             4032126874868999999987--------------------31036888899999985226104899999999998999


Q ss_pred             HHHHHHHHHHCCCEEEECCCCCCEEEEEECC-------CCHHHHHHHHHHC-CCEEEEECCCCCHHHHHCCCCCEEEEEC
Q ss_conf             4899999861798299048998579998279-------9999999999868-9199970576735577508997799976
Q batch____       305 ATLAEDALAKRPGFRSFRCQDSSLLAFDFAG-------VHHSDMVTLLAEY-GIALRAGQHCAQPLLAELGVTGTLRASF  376 (401)
Q Consensus       305 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~l~~~L~~~-gi~v~~g~~~~~~~~~~~~~~~~iRis~  376 (401)
                      ...+.+.+... |+++..|.+++++|++++.       .+..++.+.|.++ ||.+++|+.|...      .+++||||+
T Consensus       322 ~~~~~~~l~~~-g~~~~~p~~g~~~~i~l~~~~~~~~~~~~~~~~~~ll~e~gV~v~pg~~f~~~------~~g~iRis~  394 (417)
T c1ynuA_         322 QKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT------EPGWFRVCF  394 (417)
T ss_dssp             HHHHHHHHHTT-TCEECCCCSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTTCEECEETTTTTCS------STTEEEEEC
T ss_pred             HHHHHHHHHHC-CCEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEEECHHHCCC------CCCEEEEEC
T ss_conf             99999997627-98894688612899877532465444578999999999759699807220878------987799974


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             8888999999999999999998
Q batch____       377 APYNTKSDVDALVNAVDRALEL  398 (401)
Q Consensus       377 ~~~~t~edid~~i~~l~~~l~~  398 (401)
                      + ..+++++++.++.|++++++
T Consensus       395 a-~~~~~~l~~al~rl~~~l~e  415 (417)
T c1ynuA_         395 A-NLPERTLDLAMQRLKAFVGE  415 (417)
T ss_dssp             S-SSCHHHHHHHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHHHHC
T ss_conf             6-89999999999999997310