Job Description P0A756 Confidence 99.82% Date Thu Jan 5 11:04:52 GMT 2012 Rank 27 Aligned Residues 157 % Identity 15% Template c2zkiH_ PDB info PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) Resolution 2.90 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.											50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	V	L	L	L	Y	A	H	P	E	S	Q	D	S	V	A	N	R	V	L	L	K	P	A	T	Q	L	S	N	V	T	V	H	D	L	Y	A	H	Y	P	D	F	F	.	.	.	.	.	.	.	.	.	.	I	D	I	P	R	E	Q	A	L	L	R	E	H	E	V	I	V	F	Q	H	P	L	Y	T	Y	S
Query Conservation																																														.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	N	I	L	V	L	F	Y	G	Y	G	S	I	V	E	L	A	K	E	I	G	K	G	A	E	E	A	G	A	E	V	K	I	R	R	V	R	E	T	L	P	P	E	F	Q	S	R	I	P	F	D	K	V	K	D	I	P	E	V	T	L	D	D	M	R	W	A	D	G	F	A	I	G	S	P	T	R	Y	G	N
Template Known Secondary structure											S	S																	T												S		G	G	G		T	T			G	G	G	S	T	T	S		B										S									B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		C	P	A	L	L	K	E	W	L	D	R	V	L	S	R	G	F	A	S	G	P	G	G	N	Q	L	A	G	K	Y	W	R	S	V	I	T	T	G	E	P	E	S	A	Y	R	Y	D	A	L	N	R	Y	P	M	S	D	V	L	R	P	F	E	L	A	A	G	M	C	R	M	H	W	L	S	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation																	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	G	G	L	K	T	F	L	D	T	T	A	I	L	.	.	.	.	.	W	K	D	N	V	L	Y	G	K	P	V	T	F	F	T	E	A	S	T	V	H	G	.	.	.	.	.	.	.	.	.	.	G	H	E	T	T	I	L	T	M	S	T	Y	A	Y	H	F	G	M	I	I	V	P	I	G	Y	G	I	P
Template Known Secondary structure												T	T				.	.	.	.	.		T	T	T	T	T	T	T									B	S	S	T	T	S	.	.	.	.	.	.	.	.	.	.	S	S	S							T							T							T	T		S	T
Template Predicted Secondary structure																	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.											.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
														150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	P	I	I	I	Y	W	A	R	R	Q	S	A	Q	E	L	A	S	H	A	R	A	Y	G	D	W	L	A	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	F	Q	T	T	T	G	G	G	P	Y	G	A	T	H	L	G	S	K	E	E	L	D	E	M	E	R	K	I	A	R	F	Q	G	K	R	I	T	E
Template Known Secondary structure							S	S	S		B	T	T	B				B	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions