Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	L	T	P	I	R	R	Y	G	A	M	I	L	M	L	L	T	L	V	F	S	S	E	V	L	A	K	T	H	T	T	T	A	S	Q	K	S	H	L	T	K	A	S	N	K	Q	V	S	S	K	Q	E	Y	S	R	N	S	A	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	S	S	L	P	D	L	R	K	Y	P	S	G	T	P	R	K	K	A	F	L	R	T	V	M	P	Y	I	T	S	Q	N	A	A	I	T	A	E	R	N	W	L	I	S	K	Q	Y	Q	G	Q	W	S	P	A	E	R	A	R	L	K
Secondary structure
SS confidence
Disorder		?	?	?	?		?				?	?	?																																			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	I	A	K	R	Y	K	V	K	W	S	G	N	T	R	K	I	P	W	N	T	L	L	E	R	V	D	I	I	P	T	S	M	V	A	T	M	A	A	A	E	S	G	W	G	T	S	K	L	A	R	N	N	N	N	L	F	G	M	K
Secondary structure
SS confidence
Disorder												?			?																																		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	M	K	G	R	C	T	N	A	P	G	K	V	K	G	Y	S	Q	F	S	S	V	K	E	S	V	S	A	Y	V	T	N	L	N	T	H	P	A	Y	S	S	F	R	K	S	R	A	Q	L	R	K	A	D	Q	E	V	T	A	T	A
Secondary structure
SS confidence
Disorder					?						?																																									?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Sequence		M	I	H	K	L	K	G	Y	S	T	K	G	K	S	Y	N	N	Y	L	F	A	M	Y	Q	D	N	Q	R	L	I	A	A	H	M
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?																				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3fi7 chain A Region: 97 - 266 Aligned: 153 Modelled: 168 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:lmo1076 protein; PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain Phyre2 PDB 2zyc chain A Region: 116 - 274 Aligned: 134 Modelled: 146 Confidence: 99.9% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan hydrolase flgj; PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1 Phyre2 PDB 1qsa chain A domain 2 Region: 149 - 272 Aligned: 122 Modelled: 124 Confidence: 86.9% Identity: 16% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Bacterial muramidase, catalytic domain Phyre2 PDB 3gxk chain B Region: 136 - 268 Aligned: 131 Modelled: 133 Confidence: 71.0% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9 Phyre2 PDB 1gbs chain A Region: 149 - 175 Aligned: 27 Modelled: 27 Confidence: 48.7% Identity: 15% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: G-type lysozyme Phyre2 PDB 2kiq chain A Region: 65 - 87 Aligned: 23 Modelled: 23 Confidence: 41.6% Identity: 13% PDB header:transcription regulator Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of the ff domain 2 of human transcription2 elongation factor ca150 Phyre2 PDB 1u1i chain C Region: 139 - 163 Aligned: 25 Modelled: 25 Confidence: 38.5% Identity: 24% PDB header:isomerase Chain: C: PDB Molecule:myo-inositol-1-phosphate synthase; PDBTitle: myo-inositol phosphate synthase mips from a. fulgidus Phyre2 PDB 3mgw chain A Region: 136 - 173 Aligned: 37 Modelled: 38 Confidence: 38.1% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme Phyre2 PDB 1qus chain A Region: 135 - 166 Aligned: 31 Modelled: 32 Confidence: 37.7% Identity: 16% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Bacterial muramidase, catalytic domain Phyre2 PDB 2hj1 chain A domain 1 Region: 149 - 200 Aligned: 51 Modelled: 52 Confidence: 29.0% Identity: 14% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: HI0395-like Phyre2 PDB 2hj1 chain A Region: 149 - 200 Aligned: 51 Modelled: 52 Confidence: 29.0% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae Phyre2 PDB 2y8p chain A Region: 136 - 173 Aligned: 37 Modelled: 38 Confidence: 28.4% Identity: 14% PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli Phyre2 PDB 2k5j chain B Region: 110 - 188 Aligned: 56 Modelled: 57 Confidence: 25.0% Identity: 9% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 Phyre2 PDB 2juc chain A Region: 65 - 84 Aligned: 20 Modelled: 20 Confidence: 24.6% Identity: 30% PDB header:unknown function Chain: A: PDB Molecule:pre-mrna-splicing factor urn1; PDBTitle: urn1 ff domain yeast Phyre2 PDB 3mzv chain B Region: 85 - 152 Aligned: 68 Modelled: 68 Confidence: 24.2% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:decaprenyl diphosphate synthase; PDBTitle: crystal structure of a decaprenyl diphosphate synthase from2 rhodobacter capsulatus Phyre2 PDB 3oyr chain B Region: 85 - 152 Aligned: 68 Modelled: 68 Confidence: 21.3% Identity: 7% PDB header:transferase Chain: B: PDB Molecule:trans-isoprenyl diphosphate synthase; PDBTitle: crystal structure of polyprenyl synthase from caulobacter crescentus2 cb15 complexed with calcium and isoprenyl diphosphate Phyre2 PDB 1uzc chain A Region: 65 - 85 Aligned: 21 Modelled: 21 Confidence: 20.3% Identity: 19% Fold: Another 3-helical bundle Superfamily: FF domain Family: FF domain Phyre2 PDB 2e71 chain A Region: 65 - 87 Aligned: 23 Modelled: 23 Confidence: 19.0% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of the second ff domain of human2 transcription factor ca150 Phyre2 PDB 3frr chain A Region: 99 - 134 Aligned: 36 Modelled: 36 Confidence: 18.6% Identity: 17% PDB header:protein binding Chain: A: PDB Molecule:uncharacterized protein kiaa0174; PDBTitle: structure of human ist1(ntd) - (residues 1-189)(p21) Phyre2 PDB 1ppj chain E domain 2 Region: 60 - 91 Aligned: 30 Modelled: 32 Confidence: 17.6% Identity: 27% Fold: Single transmembrane helix Superfamily: ISP transmembrane anchor Family: ISP transmembrane anchor Phyre2 1 c3fi7A_ 2 c2zycA_ 3 d1qsaa2 4 c3gxkB_ 5 d1gbsa_ 6 c2kiqA_ 7 c1u1iC_ 8 c3mgwA_ 9 d1qusa_ 10 d2hj1a1 11 c2hj1A_ 12 c2y8pA_ 13 c2k5jB_ 14 c2jucA_ 15 c3mzvB_ 16 c3oyrB_ 17 d1uzca_ 18 c2e71A_ 19 c3frrA_ 20 d1ppje2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3fi7A_ 100.0 24 PDB header:hydrolase Chain: A: PDB Molecule:lmo1076 protein; PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain 2 c2zycA_ 99.9 24 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan hydrolase flgj; PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1 3 d1qsaa2 86.9 16 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 4 c3gxkB_ 71.0 15 PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9 5 d1gbsa_ 48.7 15 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:G-type lysozyme 6 c2kiqA_ 41.6 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of the ff domain 2 of human transcription2 elongation factor ca150 7 c1u1iC_ 38.5 24 PDB header:isomerase Chain: C: PDB Molecule:myo-inositol-1-phosphate synthase; PDBTitle: myo-inositol phosphate synthase mips from a. fulgidus 8 c3mgwA_ 38.1 14 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme 9 d1qusa_ 37.7 16 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 10 d2hj1a1 29.0 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like 11 c2hj1A_ 29.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae 12 c2y8pA_ 28.4 14 PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli 13 c2k5jB_ 25.0 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 14 c2jucA_ 24.6 30 PDB header:unknown function Chain: A: PDB Molecule:pre-mrna-splicing factor urn1; PDBTitle: urn1 ff domain yeast 15 c3mzvB_ 24.2 18 PDB header:transferase Chain: B: PDB Molecule:decaprenyl diphosphate synthase; PDBTitle: crystal structure of a decaprenyl diphosphate synthase from2 rhodobacter capsulatus 16 c3oyrB_ 21.3 7 PDB header:transferase Chain: B: PDB Molecule:trans-isoprenyl diphosphate synthase; PDBTitle: crystal structure of polyprenyl synthase from caulobacter crescentus2 cb15 complexed with calcium and isoprenyl diphosphate 17 d1uzca_ 20.3 19 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 18 c2e71A_ 19.0 13 PDB header:transcription Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of the second ff domain of human2 transcription factor ca150 19 c3frrA_ 18.6 17 PDB header:protein binding Chain: A: PDB Molecule:uncharacterized protein kiaa0174; PDBTitle: structure of human ist1(ntd) - (residues 1-189)(p21) 20 d1ppje2 17.6 27 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 21 d2doea1 not modelled 16.9 17 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 22 d2cqna1 not modelled 15.5 17 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 23 d1v6ga1 not modelled 15.4 35 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 24 c3kevA_ not modelled 15.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:galieria sulfuraria dcun1 domain-containing protein; PDBTitle: x-ray crystal structure of a dcun1 domain-containing protein from2 galdieria sulfuraria 25 d2opoa1 not modelled 14.9 19 Fold:EF Hand-like Superfamily:EF-hand Family:Polcalcin 26 c3ggzC_ not modelled 14.1 24 PDB header:protein transport, endocytosis Chain: C: PDB Molecule:increased sodium tolerance protein 1; PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in2 complex with did2 mim motif 27 d1p35a_ not modelled 13.3 71 Fold:Baculovirus p35 protein Superfamily:Baculovirus p35 protein Family:Baculovirus p35 protein 28 c2ktgA_ not modelled 12.4 10 PDB header:ca-binding protein Chain: A: PDB Molecule:calmodulin, putative; PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein 29 d1t6ca2 not modelled 11.9 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 30 d2o5ha1 not modelled 11.4 14 Fold:NMB0513-like Superfamily:NMB0513-like Family:NMB0513-like 31 c2ckzC_ not modelled 11.1 22 PDB header:transferase Chain: C: PDB Molecule:dna-directed rna polymerase iii 18 kd PDBTitle: x-ray structure of rna polymerase iii subcomplex c17-c25. 32 c2doqA_ not modelled 10.7 2 PDB header:cell cycle Chain: A: PDB Molecule:cell division control protein 31; PDBTitle: crystal structure of sfi1p/cdc31p complex 33 d1tn4a_ not modelled 10.5 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 34 d1kyqa2 not modelled 10.3 7 Fold:Siroheme synthase middle domains-like Superfamily:Siroheme synthase middle domains-like Family:Siroheme synthase middle domains-like 35 d1u6za3 not modelled 9.8 6 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 36 d1avsa_ not modelled 9.7 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 37 c2dimA_ not modelled 9.7 24 PDB header:dna binding protein Chain: A: PDB Molecule:cell division cycle 5-like protein; PDBTitle: solution structure of the myb_dna-binding domain of human2 cell division cycle 5-like protein 38 c1x41A_ not modelled 9.4 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional adaptor 2-like, isoform b; PDBTitle: solution structure of the myb-like dna binding domain of2 human transcriptional adaptor 2-like, isoform b 39 c3bkhA_ not modelled 9.3 17 PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144 40 c1idzA_ not modelled 9.3 25 PDB header:dna-binding protein Chain: A: PDB Molecule:mouse c-myb dna-binding domain repeat 3; PDBTitle: structure of myb transforming protein, nmr, 20 structures 41 d1bl0a2 not modelled 9.3 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 42 d1br1b_ not modelled 9.0 12 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 43 d2zdra2 not modelled 9.0 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 44 d1d5ya2 not modelled 9.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 45 d1fi6a_ not modelled 8.9 10 Fold:EF Hand-like Superfamily:EF-hand Family:Eps15 homology domain (EH domain) 46 d1f54a_ not modelled 8.8 11 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 47 d1mbja_ not modelled 8.8 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 48 c1mbjA_ not modelled 8.8 21 PDB header:dna binding protein Chain: A: PDB Molecule:myb proto-oncogene protein; PDBTitle: mouse c-myb dna-binding domain repeat 3 49 d1n0ya_ not modelled 8.6 15 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 50 d2oc6a1 not modelled 8.5 19 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 51 c3ayhA_ not modelled 8.2 17 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc9; PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii 52 c2kl4A_ not modelled 8.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2032 protein; PDBTitle: nmr structure of the protein nb7804a 53 c2k7bA_ not modelled 7.2 12 PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein 1; PDBTitle: nmr structure of mg2+-bound cabp1 n-domain 54 d1a04a1 not modelled 7.2 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 55 c3ox6C_ not modelled 7.2 13 PDB header:calcium binding protein Chain: C: PDB Molecule:calcium-binding protein 1; PDBTitle: crystal structure of the calcium sensor calcium-binding protein 12 (cabp1) 56 c1e0fJ_ not modelled 7.2 28 PDB header:coagulation/crystal structure/heparin-b Chain: J: PDB Molecule:haemadin; PDBTitle: crystal structure of the human alpha-thrombin-haemadin2 complex: an exosite ii-binding inhibitor 57 d1lkja_ not modelled 7.2 10 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 58 d1zaca_ not modelled 7.2 14 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 59 d2tpta1 not modelled 7.1 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 60 c3j04E_ not modelled 7.1 13 PDB header:structural protein Chain: E: PDB Molecule:myosin regulatory light chain 2, smooth muscle major PDBTitle: em structure of the heavy meromyosin subfragment of chick smooth2 muscle myosin with regulatory light chain in phosphorylated state 61 d1sw8a_ not modelled 7.0 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 62 c1e0fK_ not modelled 6.8 28 PDB header:coagulation/crystal structure/heparin-b Chain: K: PDB Molecule:haemadin; PDBTitle: crystal structure of the human alpha-thrombin-haemadin2 complex: an exosite ii-binding inhibitor 63 c1e0fI_ not modelled 6.8 28 PDB header:coagulation/crystal structure/heparin-b Chain: I: PDB Molecule:haemadin; PDBTitle: crystal structure of the human alpha-thrombin-haemadin2 complex: an exosite ii-binding inhibitor 64 d1e0fi_ not modelled 6.8 28 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Leech antihemostatic proteins Family:Hirudin-like 65 d1gv2a2 not modelled 6.8 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 66 c3cvgC_ not modelled 6.7 12 PDB header:metal binding protein Chain: C: PDB Molecule:putative metal binding protein; PDBTitle: crystal structure of a periplasmic putative metal binding protein 67 d1w0ta_ not modelled 6.7 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of telomeric protein 68 c1mseC_ not modelled 6.7 25 PDB header:dna binding protein/dna Chain: C: PDB Molecule:c-myb dna-binding domain; PDBTitle: solution structure of a specific dna complex of the myb dna-2 binding domain with cooperative recognition helices 69 c2xqoA_ not modelled 6.7 60 PDB header:hydrolase Chain: A: PDB Molecule:cellulosome enzyme, dockerin type i; PDBTitle: ctcel124: a cellulase from clostridium thermocellum 70 c1xuzA_ not modelled 6.6 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 71 c3cerD_ not modelled 6.6 13 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:possible exopolyphosphatase-like protein; PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13 72 c3sggA_ not modelled 6.6 10 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical hydrolase; PDBTitle: crystal structure of a hypothetical hydrolase (bt_2193) from2 bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution 73 c2ggmA_ not modelled 6.5 6 PDB header:cell cycle Chain: A: PDB Molecule:centrin-2; PDBTitle: human centrin 2 xeroderma pigmentosum group c protein2 complex 74 d1gm5a1 not modelled 6.5 27 Fold:Four-helical up-and-down bundle Superfamily:RecG, N-terminal domain Family:RecG, N-terminal domain 75 c3p45F_ not modelled 6.4 28 PDB header:hydrolase Chain: F: PDB Molecule:caspase-6; PDBTitle: crystal structure of apo-caspase-6 at physiological ph 76 d1h4ba_ not modelled 6.4 20 Fold:EF Hand-like Superfamily:EF-hand Family:Polcalcin 77 c2l7eA_ not modelled 6.3 80 PDB header:transcription Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 14; PDBTitle: the structure of a domain from yeast 78 c3mseB_ not modelled 6.2 9 PDB header:transferase Chain: B: PDB Molecule:calcium-dependent protein kinase, putative; PDBTitle: crystal structure of c-terminal domain of pf110239. 79 d1guua_ not modelled 6.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 80 c1guuA_ not modelled 6.2 17 PDB header:transcription Chain: A: PDB Molecule:myb proto-oncogene protein; PDBTitle: crystal structure of c-myb r1 81 c3bmbB_ not modelled 6.1 13 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 82 d1kbhb_ not modelled 6.0 22 Fold:Nuclear receptor coactivator interlocking domain Superfamily:Nuclear receptor coactivator interlocking domain Family:Nuclear receptor coactivator interlocking domain 83 c2krcA_ not modelled 6.0 6 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase 84 d1pdza2 not modelled 5.9 18 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 85 c3osgA_ not modelled 5.9 21 PDB header:transcription/dna Chain: A: PDB Molecule:myb21; PDBTitle: the structure of protozoan parasite trichomonas vaginalis myb2 in2 complex with mre-1-12 dna 86 d1o20a_ not modelled 5.9 16 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 87 d1eh1a_ not modelled 5.8 24 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 88 c2kn2A_ not modelled 5.7 12 PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin; PDBTitle: solution structure of the c-terminal domain of soybean calmodulin2 isoform 4 fused with the calmodulin-binding domain of ntmkp1 89 c3mn2B_ not modelled 5.7 16 PDB header:transcription regulator Chain: B: PDB Molecule:probable arac family transcriptional regulator; PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009 90 d1q8ca_ not modelled 5.7 32 Fold:NusB-like Superfamily:NusB-like Family:Hypothetical protein MG027 91 c2amiA_ not modelled 5.6 7 PDB header:cell cycle Chain: A: PDB Molecule:caltractin; PDBTitle: solution structure of the calcium-loaded n-terminal sensor2 domain of centrin 92 c1eptB_ not modelled 5.6 71 PDB header:hydrolase (serine protease) Chain: B: PDB Molecule:porcine e-trypsin; PDBTitle: refined 1.8 angstroms resolution crystal structure of2 porcine epsilon-trypsin 93 d2doda1 not modelled 5.6 19 Fold:Another 3-helical bundle Superfamily:FF domain Family:FF domain 94 d2pq3a1 not modelled 5.5 15 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 95 d1a5ja1 not modelled 5.5 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 96 c2bsjB_ not modelled 5.5 50 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein syct; PDBTitle: native crystal structure of the type iii secretion2 chaperone syct from yersinia enterocolitica 97 d1dvia_ not modelled 5.4 8 Fold:EF Hand-like Superfamily:EF-hand Family:Penta-EF-hand proteins 98 d1a5ja2 not modelled 5.3 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 99 d1w0ua_ not modelled 5.3 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of telomeric protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0