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Job DescriptionP22939
Confidence100.00%DateThu Jan 5 11:39:12 GMT 2012
Rank41Aligned Residues250
% Identity28%Templatec3tc1A_
PDB info PDB header:transferaseChain: A: PDB Molecule:octaprenyl pyrophosphate synthase; PDBTitle: crystal structure of octaprenyl pyrophosphate synthase from2 helicobacter pylori
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60.........70.........80.......
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Query Sequence  EACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLP
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Template Sequence  EKQLKAIQNKIASWIK. . EIESGFIDELFSKIGPSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDDV.
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   3......10........ .20.........30.........40.........50.........60.........70.........
 
   88.90.........100.........110.........120.........130.........140.........150.........160.......
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Query Sequence  AMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGK
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Template Sequence  . . . . . . . . . . . . . . . . . IGNFNAVMLGDVFYSKAFFELSKMGE. . . . . . . . . . . LIAQALSNAVLRLSRGEIEDVFVGEC
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   80.........90.........100..... ....110.........120.........130.
 
   168.170.........180.........190.........200.........210.........220.........230.........240......
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Query Sequence  . HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLG
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Template Sequence  FNSDKQKYWRILEDKTAHFIEASLKSMAILLN. KDA. . . KIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEG
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TTT.S
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TGGGT
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   148.150.........160.........170......... 180.. .......190.........200.........210.........220...
 
   247..250.... .....260.........270.........280.........290
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Query Sequence  KSTYPALL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLEQARKKARDLIDDARQSLKQLAEQSLDTSALEAL
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Template Sequence  KTTLPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAI. . . . . KGENNLILEKL
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   224.....230.........240.........250.........260.........270.........280....... ..290........
 
   291......
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Query Sequence  ADYIIQR
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Template Sequence  AQDVISR
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   299300.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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