Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 39 Aligned Residues 256 % Identity 27% Template c3rmgB_ PDB info PDB header:transferase Chain: B: PDB Molecule:octaprenyl-diphosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 bacteroides thetaiotaomicron Resolution 2.30 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L	I	H	D	D	L	P	A	M	D
Query Conservation
Alig confidence																																.																																														.	.
Template Conservation																																.																																														.	.
Template Sequence		I	S	L	I	K	T	P	I	E	A	E	L	E	D	F	K	A	L	F	D	A	L	L	D	S	V	I	T	H	I	.	R	K	R	N	M	M	R	P	I	L	V	L	L	V	A	R	L	Y	G	A	V	T	P	A	T	L	H	A	A	V	S	L	E	L	L	H	T	A	S	L	V	H	D	D	V	.	.	V	A
Template Known Secondary structure							G	G	G																							.																	T	T	S																								G	G	G	.	.
Template Predicted Secondary structure																																.																																														.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D	L	D	A	E	G	K	.	H	V
Query Conservation																																																																															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	N	N	K	V	S	V	L	A	G	D	Y	L	L	A	T	S	L	V	H	A	E	Q	T	N	N	Y	E	I	I	R	.	.	.	.	.	.	.	.	.	.	L	V	S	S	L	G	Q	K	L	A	E	G	E	L	L	Q	L	S	N	V	S	N	H	S	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																								T	T	T							.	.	.	.	.	.	.	.	.	.															T	T	T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.											.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G	A	D	Q	Q	L	G	K	S	T
Query Conservation
Alig confidence																															.																																		.	.	.
Template Conservation																															.																																		.	.	.
Template Sequence		S	E	E	V	Y	F	D	V	I	R	K	K	T	A	A	L	F	A	A	C	A	E	A	A	A	L	S	V	Q	.	V	G	E	E	E	V	A	F	A	R	L	L	G	E	Y	I	G	I	C	F	Q	I	K	D	D	I	F	D	Y	F	D	S	K	.	.	.	G	K	P	T	G	N	D	M	L	E	G	K	L	T
Template Known Secondary structure													T															T	T	T	.																												T	T	S				.	.	.				T	T	T	T	G	G	G	T
Template Predicted Secondary structure																															.																																		.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.
		250	.	.	.	.																																						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	P	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L	A	D
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																				.
Template Sequence		L	P	A	L	Y	A	L	N	T	T	D	A	W	A	E	Q	I	A	F	K	V	K	E	G	T	A	T	P	D	E	I	V	R	L	I	E	F	T	K	D	N	G	G	I	E	Y	A	C	R	T	I	E	Q	Y	K	K	K	A	F	D	L	L	A	A	L	P	.	D	S	N	I	C	L	A	L	R	T	Y	L	D
Template Known Secondary structure								T	T																T				T	T												T	T																					T	T	S		.
Template Predicted Secondary structure																																																																				.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.
		293	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	I	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	V	V	A	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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