Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 42 Aligned Residues 243 % Identity 18% Template c3qkcB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranyl diphosphate synthase small subunit; PDBTitle: crystal structure of geranyl diphosphate synthase small subunit from2 antirrhinum majus Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L	I
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		T	Q	T	Y	R	A	T	I	E	S	D	I	E	S	Y	L	K	K	A	I	P	.	.	I	R	A	P	E	S	V	F	E	P	M	H	H	L	T	F	A	A	P	R	T	S	A	S	A	L	C	V	A	A	C	E	L	V	G	G	D	R	S	D	A	M	A	A	A	A	A	V	H	L	M	H	V	A	A	Y	T
Template Known Secondary structure																					S		.	.				S	S	T	T											S																T	T			G	G	G	T
Template Predicted Secondary structure																							.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	.	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D
Query Conservation																																																				.
Alig confidence						.	.													.																																.
Template Conservation						.	.													.
Template Sequence		H	E	N	L	.	.	P	L	T	D	G	P	M	S	K	S	E	I	.	Q	H	K	F	D	P	N	I	E	L	L	T	G	D	G	I	I	P	F	G	L	E	L	M	A	R	S	M	D	P	T	R	N	N	P	D	R	I	L	R	A	I	I	E	L	T	R	V	M	G	S	E	G	I	V	E	G	Q	Y	H	E
Template Known Secondary structure				S		.	.		B	T	T	B		S	S	S	S			.			S	S																								S		S	S																			T	T	T	T
Template Predicted Secondary structure						.	.													.
Template SS confidence
		84	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.
Query SS confidence																																																																						.	.	.	.
Query Sequence		L	D	A	E	G	K	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	.	.	.	.	G	D	T	A	T	L	G	K
Query Conservation																																																																						.	.	.	.
Alig confidence						.																																	.																															.	.	.	.
Template Conservation						.																																	.
Template Sequence		L	G	L	N	.	Q	L	N	D	L	E	L	I	E	Y	V	C	K	K	K	E	G	T	L	H	A	C	G	A	A	C	G	A	I	L	G	G	.	C	D	E	D	K	I	E	K	L	R	R	F	G	L	Y	V	G	T	V	Q	G	L	L	G	K	N	R	S	G	F	E	G	R	I	K	E	L	K	E	L	A	V
Template Known Secondary structure		T	T			.	S	S													T																		.																								T	T			S	T	T
Template Predicted Secondary structure						.																																	.
Template SS confidence
		161	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	G	A	D	Q	Q	L	G	K	S	T	Y	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	L	E	S	F	G	G	E	K	I	E	L	I	R
Template Known Secondary structure					T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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