Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 43 Aligned Residues 270 % Identity 28% Template c3oyrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:trans-isoprenyl diphosphate synthase; PDBTitle: crystal structure of polyprenyl synthase from caulobacter crescentus2 cb15 complexed with calcium and isoprenyl diphosphate Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L
Query Conservation
Alig confidence																							.	.	.
Template Conservation																							.	.	.
Template Sequence		R	L	V	R	L	A	E	A	D	M	A	G	V	N	R	L	I	T	D	R	M	.	.	.	Q	S	D	V	A	I	I	P	A	L	A	E	H	L	I	A	A	G	G	K	R	L	R	P	L	M	T	V	A	A	A	R	L	A	G	A	D	N	D	H	F	Q	K	L	A	A	A	V	E	F	I	H	T	A	T	L
Template Known Secondary structure							T															T	.	.	.			S	S	T											T	T	T																T	T			S	S	T
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D
Query Conservation
Alig confidence							.	.								.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.								.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	D	D	V	.	.	V	V	A	A	H	L	I	.	.	.	.	.	.	.	.	.	W	G	G	A	Q	S	V	L	V	G	D	F	L	F	A	R	A	F	E	L	M	V	E	T	N	S	M	K	A	L	E	.	.	.	.	.	.	.	.	.	.	I	L	A	R	A	S	R	V	I	A	E	G	E	V	L	Q
Template Known Secondary structure			T	T	T	T	.	.					S			.	.	.	.	.	.	.	.	.	T	T																					T	T	T							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.								.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.			.	.	100	.	.	.	.										.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.											.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		162	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure								.																																																																		.	.	.	.	.	.	.	.
Query SS confidence								.																																																																		.	.	.	.	.	.	.	.
Query Sequence		L	D	A	E	G	K	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	.	.	.	.	.	.	.	.
Query Conservation								.																																																																		.	.	.	.	.	.	.	.
Alig confidence								.																																.																																		.	.	.	.	.	.	.	.
Template Conservation																																								.
Template Sequence		L	M	R	S	H	D	L	N	L	S	Q	A	V	Y	L	E	I	I	Q	A	K	T	A	E	L	F	A	A	A	S	E	A	G	A	V	S	A	G	.	V	D	V	A	K	S	E	A	L	R	D	Y	G	L	N	L	G	L	A	F	Q	L	A	D	D	A	L	D	Y	A	T	L	P	L	L	L	A	I	A	R	S
Template Known Secondary structure				T	S	S		S	S														T															T	T	.																											T	T													S
Template Predicted Secondary structure																																								.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
							233	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.										.	.
Query SS confidence		.	.	.	.	.										.	.
Query Sequence		.	.	.	.	.	A	T	L	G	K	R	Q	G	A	.	.	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L	A	D	Y	I	I	Q	R
Query Conservation		.	.	.	.	.										.	.
Alig confidence		.	.	.	.	.										.	.																																						.
Template Conservation																																																							.
Template Sequence		G	P	R	E	A	E	F	W	E	R	A	I	G	T	E	A	D	F	R	R	A	R	E	L	I	I	G	S	G	A	L	D	A	T	L	D	L	A	A	D	Y	A	D	K	A	K	A	A	L	A	M	F	P	.	A	N	D	W	R	E	A	L	E	E	L	A	D	F	A	V	S	R
Template Known Secondary structure			S														S	S											T	T																			T	T	T	T	S		.	S	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions