Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 27 Aligned Residues 256 % Identity 36% Template c3npkB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranyltranstransferase; PDBTitle: the crystal structure of geranyltranstransferase from campylobacter2 jejuni Resolution 1.50 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	.	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L	I	H	D	D	L	P
Query Conservation																																																									.
Alig confidence																																																									.
Template Conservation
Template Sequence		N	L	K	E	L	F	I	H	H	L	E	K	N	L	P	K	V	E	S	F	H	P	F	F	N	E	A	L	A	L	X	L	K	A	G	G	K	H	F	R	A	Q	L	L	L	S	V	V	Q	S	N	K	P	E	L	L	N	Q	A	L	D	V	A	L	A	L	E	F	I	H	T	Y	S	L	I	H	D	D	L	P
Template Known Secondary structure														T						S	S		S	S																														G	G	G																							T	S	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D	L	D	A	E	G	K
Query Conservation
Alig confidence																																														.	.	.
Template Conservation																																														.	.	.
Template Sequence		A	X	D	N	A	D	F	R	R	G	I	P	T	L	H	K	S	Y	D	E	T	T	A	I	L	V	G	D	A	L	N	T	E	A	F	L	V	L	S	H	A	H	L	K	.	.	.	D	E	I	K	I	K	L	I	K	T	L	A	F	N	A	G	L	N	G	X	V	I	G	Q	A	I	D	C	F	F	E	D	K
Template Known Secondary structure		T	T	T			S			T	T								S																						T	S	S	S		.	.	.																S	T	T	T											G	G	G	S
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G	A	D	Q	Q	L	G	K
Query Conservation
Alig confidence																																	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	S	L	N	E	L	E	F	L	H	T	H	K	T	A	R	L	I	A	A	A	L	K	X	G	C	E	I	C	E	.	L	N	N	E	E	S	N	Q	I	Y	K	L	G	L	K	L	G	L	I	F	Q	I	N	D	D	I	I	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																T															T	T	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	Y	P	A	L	L	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L
Query Conservation
Alig confidence		.																																	.	.
Template Conservation		.																																	.	.
Template Sequence		.	S	F	V	N	L	L	G	L	E	Q	A	I	K	T	K	E	N	L	L	N	E	C	E	Q	D	L	E	K	L	N	E	K	.	.	L	A	Q	X	I	Q	N	L
Template Known Secondary structure		.																											T	T	S				.	.
Template Predicted Secondary structure		.																																	.	.
Template SS confidence
			237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions