Phyre 2 alignment of P22939 with c3n3dB

Job Description P22939
Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012

Rank 31 Aligned Residues 273

% Identity 30% Template c3n3dB_

PDB info PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 lactobacillus brevis atcc 367

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence	D	F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	.	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence	Q	L	W	R	Q	F	P	Q	V	E	P	Q	L	T	A	L	Q	D	Y	L	L	R	T	V	Q	L	D	N	Q	P	I	H	H	K	I	L	A	L	L	K	S	G	G	K	L	L	R	P	G	Y	F	Y	L	F	S	T	F	G	N	A	A	T	P	A	Q	L	Q	A	G	A	A	A	I	E	I	L	H	V	G	T
Template Known Secondary structure	G	G	G	G	G		T	T	S															T			S														S		T	T												T	T				S
Template Predicted Secondary structure
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence	L	I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L
Query Conservation
Alig confidence							.	.				.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template Conservation							.	.				.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template Sequence	L	I	H	D	D	V	.	.	I	D	D	.	.	.	.	.	.	.	.	.	.	Q	M	T	Y	G	Q	R	N	A	I	Y	A	G	D	F	M	F	T	V	Y	F	D	Q	V	L	K	S	T	T	D	R	S	L	I	Q	.	.	.	.	.	.	.	.	.	N	H	I	D	A	M	H	R	I	L	Q	G	E	L	H
Template Known Secondary structure					T	S	.	.				.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.				.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template SS confidence
	84	.	.	.	.	.			90	.	.											.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.										.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

	161	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence	D	L	D	A	E	G	K	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q
Query Conservation								.
Alig confidence								.																																.
Template Conservation																																								.
Template Sequence	Q	M	D	L	N	Y	R	E	D	I	T	L	D	A	Y	L	N	E	I	A	G	K	T	A	E	L	F	A	L	S	C	Y	Q	G	A	Q	L	A	G	.	A	P	Q	S	V	I	D	R	T	R	D	I	G	I	A	I	G	C	A	Y	Q	M	L	D	D	I	L	D	Y	A	G	D	P	K	R	T	Q	K	P	V
Template Known Secondary structure	G	G	G	G	T	T		S	S														T																T	.																											T	T	S	S	S		S	S	S
Template Predicted Secondary structure																																								.
Template SS confidence
	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.																																				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																											.
Template Sequence	L	E	D	L	R	S	G	V	Y	S	L	P	L	L	L	S	L	S	H	A	P	R	D	F	H	K	L	L	K	K	K	Q	A	M	T	L	E	D	I	K	H	V	Q	A	L	V	A	Q	Y	D	G	V	G	A	A	K	Q	L	A	Q	D	Y	T	D	R	A	L	T	L	I	Q	Q	L	P	.	V	G	S	A	Q
Template Known Secondary structure							T								T	T	T	T	T										T	T	G	G	G			T	T												T	T																						T	S		.	S	S
Template Predicted Secondary structure																																																																											.
Template SS confidence
	232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310

	285	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	A	L	E	A	L	A	D	Y	I	I	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Q	S	L	E	Q	L	T	R	L	L	L	R	R
Template Known Secondary structure												T
Template Predicted Secondary structure
Template SS confidence
	311	.	.	.	.	.	.	.	.	320	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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