Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 5 Aligned Residues 281 % Identity 33% Template c3mzvB_ PDB info PDB header:transferase Chain: B: PDB Molecule:decaprenyl diphosphate synthase; PDBTitle: crystal structure of a decaprenyl diphosphate synthase from2 rhodobacter capsulatus Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L	I
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		L	A	Q	A	L	A	E	D	M	A	A	V	N	A	L	I	R	E	R	M	S	.	.	S	E	H	A	P	R	I	P	E	V	T	A	H	L	I	E	A	G	G	K	R	L	R	P	M	L	T	L	A	A	A	R	L	V	G	Y	G	G	P	F	H	V	H	L	A	A	T	V	E	F	I	H	T	A	T	L	L
Template Known Secondary structure						T															T		.	.		S	S		T											S	S																	T	T				S
Template Predicted Secondary structure																							.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D	L
Query Conservation
Alig confidence						.	.																																																.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		H	D	D	V	.	.	V	D	E	S	R	Q	R	R	G	R	P	T	A	N	L	L	W	D	N	K	S	S	V	L	V	G	D	Y	L	F	A	R	S	F	Q	L	M	T	D	T	G	N	M	R	V	M	E	.	.	.	.	.	.	.	.	.	.	I	L	A	N	A	S	A	V	I	A	E	G	E	V	L	Q	L
Template Known Secondary structure						.	.		T	T		S			T	T								S																						T	T								.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.											.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		163	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		D	A	E	G	K	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G	A
Query Conservation							.
Alig confidence							.																																.
Template Conservation																																							.
Template Sequence		T	A	A	Q	N	L	A	T	T	E	D	I	Y	L	R	V	I	R	G	K	T	A	A	L	F	S	A	A	T	E	V	G	G	I	I	G	G	.	A	P	E	D	Q	V	Q	A	L	F	D	Y	G	D	A	L	G	I	A	F	Q	I	V	D	D	L	L	D	Y	G	G	K	S	A	E	I	G	K	N	T	G	D
Template Known Secondary structure				T	T		T	T														T															T	T	.																													T	T	T	T	T	T				T	T		S
Template Predicted Secondary structure																																							.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.																																							.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	Q	Q	L	G	K	S	T	Y	P	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																													.
Template Sequence		D	F	R	E	R	K	L	T	M	P	V	I	K	A	V	A	L	A	D	E	A	E	R	A	F	W	K	R	V	I	E	K	G	D	Q	Q	D	G	D	L	E	H	A	M	A	L	M	T	K	H	G	T	L	E	A	T	R	L	A	A	I	G	W	T	D	T	A	R	K	A	L	A	K	L	P	.	D	H	P	L
Template Known Secondary structure					T	T												T													T	T	T					T	T												T	T																				G	G	G	S		.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	A	L	E	A	L	A	D	Y	I	I	Q	R	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Q	M	L	D	D	L	A	D	Y	V	V	E	R	V	R
Template Known Secondary structure													T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions