Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 8 Aligned Residues 278 % Identity 41% Template c3m9uD_ PDB info PDB header:transferase Chain: D: PDB Molecule:farnesyl-diphosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase2 from lactobacillus brevis atcc 367 Resolution 1.77 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	.	.	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S
Query Conservation																																																														.	.
Alig confidence																								.																																						.	.
Template Conservation																								.
Template Sequence		L	I	A	F	E	D	Q	W	V	P	A	L	N	A	P	L	K	Q	A	I	L	A	.	D	S	Q	D	A	Q	L	A	A	A	M	T	Y	S	V	L	A	G	G	K	R	L	R	P	L	L	T	V	A	T	M	Q	S	L	G	V	T	F	V	P	E	R	H	W	R	P	V	M	A	L	E	L	L	H	T	Y	S
Template Known Secondary structure															T	T								.	T		S													T	S																	T	T
Template Predicted Secondary structure																								.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L
Query Conservation
Alig confidence																																																					.	.	.
Template Conservation																																																					.	.	.
Template Sequence		L	I	H	D	D	L	P	A	M	D	N	D	A	L	R	R	G	E	P	T	N	H	V	K	F	G	A	G	M	A	T	L	A	G	D	G	L	L	T	L	A	F	Q	W	L	T	A	T	D	L	P	.	.	.	A	T	M	Q	A	A	L	V	Q	A	L	A	T	A	A	G	P	S	G	M	V	A	G	Q	A	K
Template Known Secondary structure							S	T	T	T	T			S			T	T																													T	S	S	S			.	.	.																S	T	T	T
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	D	A	E	G	K	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G
Query Conservation
Alig confidence																																								.																																.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.																																.	.	.	.	.	.	.	.	.	.
Template Sequence		D	I	Q	S	E	H	V	N	L	P	L	S	Q	L	R	V	L	H	K	E	K	T	G	A	L	L	H	Y	A	V	Q	A	G	L	I	L	G	Q	.	A	P	E	A	Q	W	P	A	Y	L	Q	F	A	D	A	F	G	L	A	F	Q	I	Y	D	D	I	L	D	V	V	S	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	T																T															T	T	.			G	G	G																											.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L	A	D	Y	I	.	I	Q	R
Query Conservation																																																								.
Alig confidence		.																																						.																.
Template Conservation		.																																						.
Template Sequence		.	S	P	A	E	A	K	N	T	Y	P	G	K	L	G	L	I	G	A	N	Q	A	L	I	D	T	I	H	S	G	Q	A	A	L	Q	G	L	P	.	T	S	T	Q	R	D	D	L	A	A	F	F	S	Y	F	D	T	E	R
Template Known Secondary structure		.						T	T	S																										T	T	S		.										G	G	G	G	G	S		T	T
Template Predicted Secondary structure		.																																						.
Template SS confidence
			232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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