Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 22 Aligned Residues 266 % Identity 46% Template c3m0gB_ PDB info PDB header:transferase Chain: B: PDB Molecule:farnesyl diphosphate synthase; PDBTitle: crystal structure of putative farnesyl diphosphate synthase from2 rhodobacter capsulatus Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L
Query Conservation
Alig confidence																											.	.													.
Template Conservation																											.	.													.
Template Sequence		S	L	S	E	R	L	K	E	V	Q	D	A	V	E	T	A	X	A	A	A	I	G	R	L	P	.	.	A	G	D	L	R	D	A	X	A	Y	A	A	.	Q	G	G	K	R	L	R	A	F	L	A	I	E	S	A	A	I	H	G	I	S	X	A	Q	A	X	P	A	A	L	A	V	E	A	L	H	A	Y	S	L
Template Known Secondary structure																								T	S		.	.		S										T	.	S		S															T	T
Template Predicted Secondary structure																											.	.													.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D
Query Conservation
Alig confidence																																																					.	.
Template Conservation																																																					.	.
Template Sequence		V	H	D	D	X	P	C	X	D	N	D	D	L	R	R	G	L	P	T	V	H	K	K	W	D	D	A	T	A	V	L	A	G	D	A	L	Q	T	L	A	F	E	L	C	T	D	P	V	L	G	S	.	.	A	E	N	R	V	A	L	V	A	A	L	A	Q	A	S	G	A	E	G	X	V	Y	G	Q	A	L	D
Template Known Secondary structure					T	S	T	T	T	T			S			T	T								S																				T	T		G	G	G			.	.																S	T	T	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		162	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		L	D	A	E	G	K	.	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q
Query Conservation								.	.
Alig confidence								.	.																																			.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	A	E	T	A	A	V	P	L	T	L	D	E	I	I	R	L	Q	A	G	K	T	G	A	L	I	S	F	A	A	Q	A	G	A	I	L	A	G	A	D	R	.	.	.	.	G	P	L	T	A	Y	A	T	A	L	G	L	A	F	Q	I	A	D	D	I	L	D	V	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T		S	S															T																T				.	.	.	.																						T		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L	A	D	Y	I	I	Q	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																		.	.	.
Template Conservation		.	.	.	.	.	.	.																																		.	.	.
Template Sequence		.	.	.	.	.	.	.	K	A	T	F	V	S	L	L	G	L	A	G	A	K	S	R	A	A	D	L	V	A	E	A	E	A	A	L	A	P	Y	G	E	.	.	.	A	A	S	T	L	R	A	C	A	R	Y	V	I	E	R
Template Known Secondary structure		.	.	.	.	.	.	.																											T	T	G	G	G	G	G	.	.	.	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.																																		.	.	.
Template SS confidence
									240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions