Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 38 Aligned Residues 259 % Identity 31% Template c3lmdA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase2 from corynebacterium glutamicum atcc 13032 Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		D	F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	.	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S
Query Conservation																																																															.
Alig confidence																							.	.	.																																						.
Template Conservation																							.	.	.
Template Sequence		E	L	T	A	R	I	N	D	A	M	V	Q	V	E	E	L	L	H	T	E	L	.	.	.	S	S	G	E	D	F	L	V	D	I	V	M	H	L	T	R	A	G	G	K	R	F	R	P	M	F	A	L	L	A	S	E	F	G	E	K	P	L	S	E	N	V	I	K	A	A	V	V	V	E	I	T	H	L	A	T
Template Known Secondary structure																							.	.	.	T		S																S													T	T	S	S	S	T	T
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L
Query Conservation
Alig confidence								.	.			.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.			.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	H	D	D	V	.	.	M	D	.	.	.	.	.	.	.	.	.	.	.	N	A	R	W	D	N	S	V	A	I	L	A	G	D	I	L	L	A	H	A	S	G	L	M	S	Q	L	G	.	.	.	.	.	.	.	.	.	.	.	T	D	T	V	A	H	F	A	E	T	F	G	E	L	V	T	G	Q	M	R
Template Known Secondary structure								.	.			.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.			.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.			.	.												.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.												.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	D	A	E	G	K	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G
Query Conservation
Alig confidence																																								.																																	.	.	.	.	.	.	.	.
Template Conservation																																								.																																	.	.	.	.	.	.	.	.
Template Sequence		E	T	V	G	P	R	D	T	D	P	I	E	H	Y	T	N	V	I	R	E	K	T	G	V	L	I	A	S	A	G	Y	L	G	A	M	H	A	G	.	A	A	P	E	H	I	D	A	L	K	N	F	G	A	A	V	G	M	I	F	Q	I	V	D	D	I	I	D	I	F	S	P	.	.	.	.	.	.	.	.	G
Template Known Secondary structure							T	T	S														T															T	T	.																																	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.																																	.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.									.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.																																						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																													.
Template Sequence		T	D	L	R	E	G	V	F	T	L	P	V	L	Y	A	L	R	E	D	T	P	V	G	A	E	L	R	D	I	L	T	G	P	L	E	D	D	E	T	V	N	H	V	L	E	L	L	S	Q	S	G	G	R	Q	A	A	L	D	E	V	Y	R	Y	M	D	I	A	N	A	E	L	D	R	L	P	.	D	S	T	V
Template Known Secondary structure							T														S											S	S				S														S	S																					T	T	S		.		S
Template Predicted Secondary structure																																																																													.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	A	L	E	A	L	A	D	Y	I	I	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	A	L	R	N	L	A	T	F	T	V	K	R
Template Known Secondary structure															T
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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