Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 36 Aligned Residues 274 % Identity 30% Template c3lk5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of putative geranylgeranyl pyrophosphate synthase2 from corynebacterium glutamicum Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.							.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.
Query Sequence		D	F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	.	.	.	.	.	.	S	T	N	T	L	D	A	P	A	A	A	V	E	C
Query Conservation																																																														.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.
Template Conservation
Template Sequence		K	F	P	E	V	V	R	D	R	L	T	Q	F	L	D	A	Q	E	L	T	I	A	D	I	G	A	P	V	T	D	A	V	A	H	L	R	S	F	V	L	N	G	G	K	R	I	R	P	L	Y	A	W	A	G	F	L	A	A	Q	G	H	K	N	S	S	E	K	L	E	S	V	L	D	A	A	A	S	L	E	F
Template Known Secondary structure		T																																								S																			T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	A	Y	S	L	I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C
Query Conservation
Alig confidence													.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template Conservation													.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template Sequence		I	Q	A	C	A	L	I	H	D	D	I	.	.	I	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	V	S	V	S	I	L	A	G	D	X	A	L	V	W	A	E	D	X	L	Q	D	S	G	L	S	A	E	A	L	A	R	T	R	D	A	W	.	.	.	.	.	R	G	X	R	T	E	V	I
Template Known Secondary structure													.	.		T		.	.	.	.	.	.	.	.	.	.	.	.	.																							T	S															.	.	.	.	.
Template Predicted Secondary structure													.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110			.	.	.														.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure												.																					.
Query SS confidence												.																					.
Query Sequence		G	G	Q	A	L	D	L	D	A	E	.	G	K	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	.	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A
Query Conservation												.																					.
Alig confidence												.																					.														.
Template Conservation																																															.
Template Sequence		G	G	Q	L	L	D	I	Y	L	E	S	H	A	N	E	S	V	E	L	A	D	S	V	N	R	F	K	T	A	A	Y	T	I	A	R	P	L	H	L	G	A	S	I	A	G	.	G	S	P	Q	L	I	D	A	L	L	H	Y	G	H	D	I	G	I	A	F	Q	L	R	D	D	L	L	G	V	F	G	D	P	A
Template Known Secondary structure													T	T															T					T											T	T	.																															S
Template Predicted Secondary structure																																															.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.																																									.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	G	K	R	Q	G	A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	G	K	P	A	G	D	D	I	R	E	G	K	R	T	V	L	L	A	L	A	L	Q	R	A	D	K	Q	S	P	E	A	A	T	A	I	R	A	G	V	G	K	V	T	S	P	E	D	I	A	V	I	T	E	H	I	R	A	T	G	A	E	E	E	V	E	Q	R	I	S	Q	L	T	E	S	G	L	A	H
Template Known Secondary structure				S	S		T	T					T	T																												T	T	T			S														T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L	A	D	Y	I	I	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	D	V	D	I	P	D	E	V	R	A	Q	L	R	A	L	A	I	R	S	T	E
Template Known Secondary structure		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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