Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 32 Aligned Residues 262 % Identity 23% Template c3ipiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of a geranyltranstransferase from the2 methanosarcina mazei Resolution 1.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L	I	H	D
Query Conservation
Alig confidence									.												.	.
Template Conservation									.												.	.
Template Sequence		E	E	W	E	E	Y	R	.	Y	V	E	A	G	I	K	E	S	I	T	.	.	L	I	E	D	P	G	L	K	K	X	V	E	H	V	C	H	S	G	G	K	R	I	R	P	I	I	L	L	L	V	S	E	I	C	S	G	S	Y	S	R	S	L	N	A	A	L	A	V	E	X	X	H	S	A	S	L	I	H	D
Template Known Secondary structure		G	G	S					.												.	.	T			S												T	T																			S			G	G	G
Template Predicted Secondary structure									.												.	.
Template SS confidence
		14	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D	L	D	A
Query Conservation
Alig confidence				.	.																																										.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation				.	.																																										.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Sequence		D	L	.	.	L	D	Q	G	L	V	R	R	N	L	P	S	A	P	E	K	F	G	P	S	G	A	L	L	C	G	D	Y	L	I	A	K	S	I	A	F	I	S	P	Y	G	.	.	.	.	.	.	.	.	.	.	.	E	K	V	I	Q	D	F	G	K	A	G	X	D	X	A	E	G	E	V	L	D	L	.	.
Template Known Secondary structure				.	.					T	S		T	T	S						S	S																					G	G	G		.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Predicted Secondary structure				.	.																																										.	.	.	.	.	.	.	.	.	.	.																							.	.
Template SS confidence
		91	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.												.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	K	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G	A	D	Q	Q
Query Conservation
Alig confidence		.	.	.	.	.																														.
Template Conservation		.	.	.	.	.																														.
Template Sequence		.	.	.	.	.	K	E	N	D	Y	F	K	C	I	Y	K	K	T	A	S	L	F	A	I	S	A	S	I	G	A	Y	T	G	G	.	A	E	E	E	L	A	E	R	F	S	H	F	G	N	A	L	G	T	A	Y	Q	I	V	D	D	I	L	E	F	L	E	V	V	E	G	E	T	L	P	H	I	Y	X	K	S
Template Known Secondary structure		.	.	.	.	.													T															T	T	.																																											T	T	T
Template Predicted Secondary structure		.	.	.	.	.																														.
Template SS confidence
							156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	K	S	T	Y	P	A	L	L	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L	A	D	Y	I	I	Q
Query Conservation
Alig confidence							.	.	.	.	.																									.
Template Conservation							.	.	.	.	.																									.
Template Sequence		T	S	K	E	E	.	.	.	.	.	A	L	K	K	S	I	D	C	V	K	L	H	V	A	A	A	K	E	T	L	E	T	F	R	.	E	C	P	A	R	D	K	L	F	Q	I	T	D	Y	I	T	V
Template Known Secondary structure		S					.	.	.	.	.																					T	T	S		.		S													T	T	G
Template Predicted Secondary structure							.	.	.	.	.																									.
Template SS confidence
		244	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions