Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 26 Aligned Residues 285 % Identity 21% Template c3ez3A_ PDB info PDB header:lyase Chain: A: PDB Molecule:farnesyl pyrophosphate synthase, putative; PDBTitle: crystal structure of plasmodium vivax geranylgeranylpyrophosphate2 synthase pvx_092040 with zoledronate and ipp bound Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																						.	.																																										.	.	.	.	.
Query SS confidence																						.	.																																										.	.	.	.	.
Query Sequence		F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	.	.	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	.	.	.	.	.	N	T	L	D	A	P	A	A	A	V	E	C
Query Conservation																						.	.																																										.	.	.	.	.
Alig confidence																						.	.																																										.	.	.	.	.
Template Conservation
Template Sequence		F	R	N	M	Y	D	K	Y	R	D	A	F	L	S	H	L	N	E	Y	S	L	E	E	E	I	K	E	H	I	S	K	Y	Y	K	L	L	F	D	Y	N	C	L	G	G	K	N	N	R	G	I	L	V	I	L	I	Y	E	Y	V	K	N	R	I	N	S	S	E	W	E	K	A	A	C	L	A	W	C	I	E	I
Template Known Secondary structure					T														T	S	S																						S	S	S																S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		I	H	A	Y	S	L	I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	.	.	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G
Query Conservation																																																.	.
Alig confidence													.	.																																		.	.																						.	.	.	.	.
Template Conservation													.	.																																																									.	.	.	.	.
Template Sequence		L	Q	A	A	F	L	V	A	D	D	I	.	.	M	D	K	G	E	M	R	R	N	K	Y	C	W	Y	L	L	K	D	V	E	T	K	N	A	V	N	D	V	L	L	L	Y	N	S	I	Y	K	L	I	E	I	Y	L	R	N	E	S	C	Y	V	D	V	I	A	T	F	.	.	.	.	.	R	D	A	T	L	K
Template Known Secondary structure													.	.		T	T					T	T				G	G	G	S	T	T	T																									T	T	S	T	T									.	.	.	.	.
Template Predicted Secondary structure													.	.																																																									.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.						.	.	.	.	.	190
		154	.	.	.	.	.	160	.	.	.	.	.	.	.																						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																.
Query Sequence		M	C	G	G	Q	A	L	D	L	D	A	E	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	.	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	.	G	R	R	A	L	P	V	L	D	K
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																.
Template Conservation
Template Sequence		T	I	I	G	Q	H	L	D	T	N	I	F	S	D	K	Y	S	E	I	D	V	N	N	I	N	V	P	E	Q	P	V	I	D	I	N	M	I	N	F	G	V	Y	K	N	I	V	I	H	K	T	A	Y	Y	S	F	F	L	P	I	V	C	G	M	L	L	A	G	I	A	V	D	N	L	I	Y	K	K	I	E	D
Template Known Secondary structure												T	T	S	T	T	T					T	T		S	S	S								G	G	G		S												T					T												T			T	T		T
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G	A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.
Template Sequence		I	S	M	L	M	G	E	Y	F	Q	I	H	D	D	Y	L	D	I	F	G	D	S	T	K	T	G	K	.	V	G	S	D	I	Q	N	N	K	L	T	W	P	L	I	K	T	F	E	L	C	S	E	P	D	K	I	K	I	V	K	N	Y	G	K	N	N	L	A	C	V	K	V	I	D	S	L	Y	E	Q	Y	K
Template Known Secondary structure																					S						S	S	.				T	T	T	T	T													S												T	T																	T	T
Template Predicted Secondary structure																													.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
				257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L	A	D	Y	I	I	Q
Query Conservation		.	.
Alig confidence		.	.																							.
Template Conservation																										.
Template Sequence		I	R	K	H	Y	E	S	Y	E	K	A	Q	K	A	K	I	L	S	A	I	N	E	L	H	.	H	E	G	I	E	Y	V	L	K	Y	L	L	E	I	L	F	T
Template Known Secondary structure																						T	T	S		.															T	T	T
Template Predicted Secondary structure																										.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions