Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 34 Aligned Residues 267 % Identity 27% Template c3aq0G_ PDB info PDB header:transferase Chain: G: PDB Molecule:geranyl diphosphate synthase; PDBTitle: ligand-bound form of arabidopsis medium/long-chain length prenyl2 pyrophosphate synthase (surface polar residue mutant) Resolution 2.65 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																							.	.																						.	.	.
Query SS confidence																																							.	.																						.	.	.
Query Sequence		L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	.	.	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	.	.	.	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L
Query Conservation																																							.	.																						.	.	.
Alig confidence																																							.	.																						.	.	.
Template Conservation
Template Sequence		F	S	L	V	A	D	E	L	S	L	L	S	N	K	L	R	E	M	V	L	A	E	V	P	K	L	A	S	A	A	E	Y	F	F	K	R	G	V	Q	G	K	Q	F	R	S	T	I	L	L	L	M	A	T	A	L	D	V	T	S	E	L	R	V	R	Q	R	G	I	A	E	I	T	E	M	I	H	V	A	S	L
Template Known Secondary structure		T	G	G	G											T		S	S	S	S	T	T	S	S											S	S	S	S																T	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D
Query Conservation
Alig confidence							.	.			.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.			.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	D	D	V	.	.	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	V	M	G	N	K	M	S	V	L	A	G	D	F	L	L	S	R	A	C	G	A	L	A	A	L	K	N	T	E	V	V	A	.	.	.	.	.	.	.	.	.	.	L	L	A	T	A	V	E	H	L	V	T	G	E	T	M	E
Template Known Secondary structure							.	.			.	.	.	.	.	.	.	.	.	.	.	.	.				T	T																				T	T							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.			.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.			110	.														.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.											.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		L	D	A	E	G	K	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G
Query Conservation								.
Alig confidence								.																																.
Template Conservation																																								.
Template Sequence		I	T	S	S	T	A	A	R	Y	S	M	D	Y	Y	M	Q	K	T	Y	Y	K	T	A	S	L	I	S	N	S	C	K	A	V	A	V	L	T	G	.	Q	T	A	E	V	A	V	L	A	F	E	Y	G	R	N	L	G	L	A	F	Q	L	I	D	D	I	L	D	F	T	G	T	S	A	S	L	G	K	G	S	L
Template Known Secondary structure			S							T														T														T	T	.																																	S	S	S		S	S
Template Predicted Secondary structure																																								.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.																																		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Query Sequence		A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	.	.	.	.	.
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation
Template Sequence		S	D	I	R	H	G	V	I	T	A	P	I	L	F	A	M	E	E	F	P	Q	L	R	E	V	V	D	Q	V	A	A	D	P	R	N	V	D	I	A	L	E	Y	L	G	K	S	K	G	I	Q	R	A	R	E	L	A	M	E	H	A	N	L	A	A	A	A	I	G	S	L	P	E	T	D	N	E	D	V	K	R
Template Known Secondary structure						T	T														T	T							T	T	T	T		T	T											T	S	S																						T	S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	S	A	L	E	A	L	A	D	Y	I	I	Q	R	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	R	A	L	I	D	L	T	H	R	V	I	T	R	N	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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