Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 20 Aligned Residues 289 % Identity 22% Template c2ogdB_ PDB info PDB header:transferase Chain: B: PDB Molecule:farnesyl pyrophosphate synthase; PDBTitle: t. brucei farnesyl diphosphate synthase complexed with bisphosphonate2 bph-527 Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.										.	.	.	.	.	70	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.
Query Sequence		D	F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	.	.	.	.	.	.	.	.	.	T	L	D	A	P	A	A	A
Query Conservation																																																																	.	.	.	.	.	.	.	.	.
Alig confidence																																									.																								.	.	.	.	.	.	.	.	.
Template Conservation																																									.
Template Sequence		M	F	M	Q	V	Y	D	E	I	Q	M	F	L	L	E	E	L	E	L	K	F	D	M	D	P	N	R	V	R	Y	L	R	K	M	M	D	T	T	C	.	L	G	G	K	Y	N	R	G	L	T	V	I	D	V	A	E	S	L	L	S	L	D	D	G	A	R	R	K	R	V	L	H	D	A	C	V	C	G	W	M
Template Known Secondary structure																						S																			.	S	S	S																T	T				S
Template Predicted Secondary structure																																									.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		V	E	C	I	H	A	Y	S	L	I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	.	.	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G
Query Conservation																																					.	.
Alig confidence																.	.																				.	.																																										.	.
Template Conservation																.	.																																																															.	.
Template Sequence		I	E	F	L	Q	A	H	Y	L	V	E	D	D	I	.	.	M	D	N	S	V	T	R	R	G	K	P	C	W	Y	R	H	P	D	V	T	V	Q	C	A	I	N	D	G	L	L	L	K	S	W	T	H	M	M	A	M	H	F	F	A	D	R	P	F	L	Q	D	L	L	C	R	F	N	R	V	D	Y	T	.	.
Template Known Secondary structure																.	.			T					T	T				G	G	G	S	T	T																										T	T		T	T															.	.
Template Predicted Secondary structure																.	.																																																															.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.																		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		I	A	G	M	C	G	G	Q	A	L	D	L	D	A	E	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	.	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence		.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation		.	.	.
Template Sequence		.	.	.	T	A	V	G	Q	L	Y	D	V	T	S	M	F	D	S	N	K	L	D	P	D	V	S	Q	P	T	T	T	D	F	A	E	F	T	L	S	N	Y	K	R	I	V	K	Y	K	T	A	Y	Y	T	Y	L	L	P	L	V	M	G	L	I	V	S	E	A	L	P	T	V	D	M	G	V	T	E	E	L	A
Template Known Secondary structure		.	.	.										T	T	T	S		G	G	G			T	T	S						S	S		T	T														T					T											T	T		G	G	G	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G	A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.
Template Sequence		M	L	M	G	E	Y	F	Q	V	Q	D	D	V	M	D	C	F	T	P	P	E	R	L	G	K	.	V	G	T	D	I	Q	D	A	K	C	S	W	L	A	V	T	F	L	A	K	A	S	S	A	Q	V	A	E	F	K	A	N	Y	G	S	G	D	S	E	K	V	A	T	V	R	R	L	Y	E	E	A	D	L	Q
Template Known Secondary structure																			S						S	S	.				T	T	T	T	T																									T	T																	T	T
Template Predicted Secondary structure																											.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	.	Q	S	L	D	T	S	A	L	E	A	L	A	D	Y	I	I	Q	R	N	K
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		G	D	Y	V	A	Y	E	A	A	V	A	E	Q	V	K	E	L	I	E	K	L	R	L	C	S	P	G	F	A	A	S	V	E	T	L	W	G	K	T	Y	K	R	Q	K
Template Known Secondary structure																								T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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