Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 30 Aligned Residues 279 % Identity 21% Template c2o1oB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative farnesyl pyrophosphate synthase; PDBTitle: cryptosporidium parvum putative polyprenyl pyrophosphate2 synthase (cgd4_2550) in complex with risedronate. Resolution 2.42 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.					.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.
Query SS confidence																																																														.	.	.	.
Query Sequence		D	F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	.	.	.	.	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H
Query Conservation																																																														.	.	.	.
Alig confidence																					.	.	.	.	.																.																					.	.	.	.
Template Conservation																					.	.	.	.	.																.
Template Sequence		D	F	I	N	Y	Y	D	K	F	K	V	I	V	Y	N	V	L	K	K	.	.	.	.	.	L	P	V	I	E	Y	Y	L	N	C	I	D	Y	N	V	.	K	K	G	K	H	I	R	G	K	I	L	V	L	I	S	S	L	S	S	A	Y	S	N	I	K	R	D	S	I	Y	L	L	G	W	V	V	E	A	I	Q
Template Known Secondary structure		T	T	G	G	G												T			.	.	.	.	.															T	.	S	S	S															S	S		S		S	T
Template Predicted Secondary structure																					.	.	.	.	.																.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	S	L	I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G
Query Conservation
Alig confidence											.	.																																										.																			.	.
Template Conservation											.	.																																										.																			.	.
Template Sequence		A	L	I	L	I	A	D	D	I	.	.	M	D	S	G	K	F	R	R	G	A	P	C	W	Y	I	V	H	G	Q	S	N	A	I	N	D	I	F	F	L	K	M	L	S	L	S	L	I	F	E	L	S	.	S	V	F	G	N	D	I	V	M	K	I	Q	K	I	Y	N	E	S	.	.	I	F	F	T	V	L	G
Template Known Secondary structure											.	.		T	T					T	T																														T	T		.																			.	.
Template Predicted Secondary structure											.	.																																										.																			.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.
		158	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure									.	.	.																						.														.
Query SS confidence									.	.	.																						.														.
Query Sequence		Q	A	L	D	L	D	A	.	.	.	E	G	K	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	.	I	R	A	A	V	R	L	G	A	L	S	A	G	.	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T
Query Conservation									.	.	.																						.														.
Alig confidence									.	.	.																						.														.																																	.	.
Template Conservation																																																																																.	.
Template Sequence		Q	H	L	D	L	S	Y	F	D	L	S	K	A	D	K	I	S	E	R	Y	F	S	M	V	E	M	K	T	S	R	Y	T	F	Y	M	P	V	F	F	G	L	T	L	S	E	I	Q	V	S	S	A	Q	L	N	L	I	E	A	I	L	Y	K	L	G	E	F	Y	Q	V	H	N	D	V	S	D	Y	L	F	.	.
Template Known Secondary structure							S				S	S			S	S													T					T												T					S	S	T	T																										.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.																																	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	L	G	K	R	Q	G	A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation		.	.	.																																																																												.
Template Sequence		.	.	.	N	D	S	N	A	D	D	I	C	R	F	K	L	T	W	P	L	Q	K	S	F	E	I	A	D	E	E	M	K	L	K	I	S	E	N	Y	G	K	N	S	S	L	V	K	D	C	Y	N	L	L	K	I	N	E	H	Y	L	E	Y	Q	R	N	A	L	D	Y	L	I	K	L	V	K	D	I	T	.	D
Template Known Secondary structure		.	.	.			S	T	T	S	T	T	T	T	T															T	T									T	T	T												T	T																					T	T		S	.	S
Template Predicted Secondary structure		.	.	.																																																																												.
Template SS confidence
					262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	D	T	S	A	L	E	A	L	A	D	Y	I	I	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	L	Q	K	V	F	I	H	L	I	H	Q	I	S	E	L
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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