Return to main results Retrieve Phyre Job Id

Job DescriptionP22939
Confidence100.00%DateThu Jan 5 11:39:12 GMT 2012
Rank14Aligned Residues274
% Identity43%Templatec2j1pB_
PDB info PDB header:transferaseChain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: geranylgeranyl diphosphate synthase from sinapis alba in2 complex with ggpp
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 














Query SS confidence 















































































Query Sequence  DFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSL
Query Conservation       
      
   
             
          



 

 
 
      
         
 





 


Alig confidence 





















..























































Template Conservation       
      
   
   
 ..      
          


  

 
 
      
         







 


Template Sequence  DPISYIIRKADSVNKALDSAVP. . LREPLKIHEAXRYSLLAGGKRVRPVLCIAACELVGGEESLAXPAACAVEXIHTXSL
Template Known Secondary structure 
S
..S
SSTT



TT

Template Predicted Secondary structure 



..












Template SS confidence 















































































   12.......20.........30... ......40.........50.........60.........70.........80.........
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  IHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALD
Query Conservation 




   
 
  


 
  
   
   


 

 
   
  

                      
        

  
Alig confidence 















































































Template Conservation 




   
 
  


 
      
   


 

 
   
   
                   
        
  

 

Template Sequence  IHDDLPCXDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVD
Template Known Secondary structure  STTTT

STT

S
TTS
STTT
Template Predicted Secondary structure 






























Template SS confidence 















































































   90.........100.........110.........120.........130.........140.........150.........160.........
 
   162..... ..170.........180.........190.........200.........210.........220.........230........
Predicted Secondary structure 



...













Query SS confidence 





. . .






































































Query Sequence  LDAEGK. . . HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKR
Query Conservation        ...  
   
  
   

  
       

 


         
   
  

 



 

 

        

 
Alig confidence 





...






























.































.......
Template Conservation             
   
      

  

      

 


.        
   
  

 



 

 

    .......
Template Sequence  ISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG. GSDEEIERLRKFARCIGLLFQVVDDILDVTKS. . . . . . .
Template Known Secondary structure 



TT
SSSSTTT.


.......
Template Predicted Secondary structure 










.






.......
Template SS confidence 















































































   170.........180.........190.........200......... 210.........220.........230.........240.
 
   239240.........250.........260.........270.........280.........290....
Predicted Secondary structure 











Query SS confidence 























































Query Sequence  QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYI
Query Conservation   
 

  

 
     

  
          
   
  
         
  
    
Alig confidence  .......


































..











Template Conservation  ....... 
 
 
    
             
   
      ..    
  

  
Template Sequence  . . . . . . . SKLTYPKLXGLEKSREFAEKLNTEARDQLLGFDSD. . KVAPLLALANYI
Template Known Secondary structure  .......




TTTTS
..
Template Predicted Secondary structure  .......





..

Template SS confidence 























































   242.......250.........260.........270...... ...280........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions