Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 14 Aligned Residues 274 % Identity 43% Template c2j1pB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: geranylgeranyl diphosphate synthase from sinapis alba in2 complex with ggpp Resolution 1.8 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L
Query Conservation
Alig confidence																								.	.
Template Conservation																								.	.
Template Sequence		D	P	I	S	Y	I	I	R	K	A	D	S	V	N	K	A	L	D	S	A	V	P	.	.	L	R	E	P	L	K	I	H	E	A	X	R	Y	S	L	L	A	G	G	K	R	V	R	P	V	L	C	I	A	A	C	E	L	V	G	G	E	E	S	L	A	X	P	A	A	C	A	V	E	X	I	H	T	X	S	L
Template Known Secondary structure																						S		.	.	S		S	S												T	T																	T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	H	D	D	L	P	C	X	D	N	D	D	L	R	R	G	K	P	T	N	H	K	V	Y	G	E	D	V	A	V	L	A	G	D	A	L	L	S	F	A	F	E	H	L	A	S	A	T	S	S	E	V	S	P	A	R	V	V	R	A	V	G	E	L	A	K	A	I	G	T	E	G	L	V	A	G	Q	V	V	D
Template Known Secondary structure						S	T	T	T	T			S			T	T																																S		T	T	S																	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		L	D	A	E	G	K	.	.	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R
Query Conservation								.	.	.
Alig confidence								.	.	.																																.																																	.	.	.	.	.	.	.
Template Conservation																																										.																																	.	.	.	.	.	.	.
Template Sequence		I	S	S	E	G	L	D	L	N	N	V	G	L	E	H	L	K	F	I	H	L	H	K	T	A	A	L	L	E	A	S	A	V	L	G	G	I	I	G	G	.	G	S	D	E	E	I	E	R	L	R	K	F	A	R	C	I	G	L	L	F	Q	V	V	D	D	I	L	D	V	T	K	S	.	.	.	.	.	.	.
Template Known Secondary structure							T	T		S	S	S	S												T															T	T	.																																	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.																																	.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L	A	D	Y	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																				.	.
Template Conservation		.	.	.	.	.	.	.																																				.	.
Template Sequence		.	.	.	.	.	.	.	S	K	L	T	Y	P	K	L	X	G	L	E	K	S	R	E	F	A	E	K	L	N	T	E	A	R	D	Q	L	L	G	F	D	S	D	.	.	K	V	A	P	L	L	A	L	A	N	Y	I
Template Known Secondary structure		.	.	.	.	.	.	.																												T	T	T	T	S				.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																																				.	.
Template SS confidence
									242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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