Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 37 Aligned Residues 254 % Identity 43% Template c2j1oA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: geranylgeranyl diphosphate synthase from sinapis alba Resolution 2.0 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L	I	H
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		I	S	Y	I	I	R	K	A	D	S	V	N	K	A	L	D	S	A	V	P	.	.	L	R	E	P	L	K	I	H	E	A	M	R	Y	S	L	L	A	G	G	K	R	V	R	P	V	L	C	I	A	A	C	E	L	V	G	G	E	E	S	L	A	M	P	A	A	C	A	V	E	M	I	H	T	M	S	L	I	H
Template Known Secondary structure																				S		.	.			S	S													S																	T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D	L	D
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.
Template Sequence		D	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	E	D	V	A	V	L	A	G	D	A	L	L	S	F	A	F	E	H	L	A	S	A	T	S	S	E	V	S	P	A	R	V	V	R	A	V	G	E	L	A	K	A	I	G	T	E	G	L	V	A	G	Q	V	V	D	I	.
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									S		T	T	S																	T	T	T	T										.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.
Template SS confidence
		92	.	.																			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	G	K	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G	A	D	Q
Query Conservation
Alig confidence		.	.	.																																	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	S	N	V	G	L	E	H	L	K	F	I	H	L	H	K	T	A	A	L	L	E	A	S	A	V	L	G	G	I	I	G	G	.	G	S	D	E	E	I	E	R	L	R	K	F	A	R	C	I	G	L	L	F	Q	V	V	D	D	I	L	D	V	T	I	A	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.																T															T	T	.																																T	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	G	K	S	T	Y	P	A	L	L	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L	A	D	Y	I	I	Q	R	N
Query Conservation
Alig confidence		.	.																																		.	.
Template Conservation		.	.																																		.	.
Template Sequence		.	.	D	K	L	T	Y	P	K	L	M	G	L	E	K	S	R	E	F	A	E	K	L	N	T	E	A	R	D	Q	L	L	G	F	D	.	.	S	D	K	V	A	P	L	L	A	L	A	N	Y	I	A	N	R	Q
Template Known Secondary structure		.	.	T	T	S						S																				T	T	T	S		.	.
Template Predicted Secondary structure		.	.																																		.	.
Template SS confidence
				256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions