Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 23 Aligned Residues 282 % Identity 24% Template c2f94F_ PDB info PDB header:transferase Chain: F: PDB Molecule:farnesyl diphosphate synthase; PDBTitle: crystal structure of human fpps in complex with ibandronate Resolution 1.94 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.								.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.																																			.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.																																			.	.	.	.	.	.	.
Query Sequence		F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	.	.	.	.	.	.	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	.	.	.	.	.	.	.	N	T	L	D	A	P
Query Conservation																													.	.	.	.	.	.																																			.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.												.																							.	.	.	.	.	.	.
Template Conservation																																														.
Template Sequence		Y	A	Q	E	K	Q	D	F	V	Q	H	F	S	Q	I	V	R	V	L	T	E	D	E	M	G	H	P	E	I	G	D	A	I	A	R	L	K	E	V	L	E	Y	N	A	.	I	G	G	K	Y	N	R	G	L	T	V	V	V	A	F	R	E	L	V	E	P	R	K	Q	D	A	D	S	L	Q	R	A	W	T	V
Template Known Secondary structure		T										T											T	T	T	T		G	G	G															S	.	S	S	S																S		G	G	G
Template Predicted Secondary structure																																														.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		A	A	A	V	E	C	I	H	A	Y	S	L	I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	.	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A
Query Conservation																																									.
Alig confidence																			.	.																					.																																			.	.	.	.	.
Template Conservation																			.	.																																																								.	.	.	.	.
Template Sequence		G	W	C	V	E	L	L	Q	A	F	F	L	V	A	D	D	I	.	.	M	D	S	S	L	T	R	R	G	Q	I	C	W	Y	Q	K	P	G	V	G	L	D	A	I	N	D	A	N	L	L	E	A	C	I	Y	R	L	L	K	L	Y	C	R	E	Q	P	Y	Y	L	N	L	I	E	L	F	.	.	.	.	.	L
Template Known Secondary structure																			.	.		T	T					T	T				G	G	G	S	T	T	T	G	G	G																					T	T	S	T	T									.	.	.	.	.
Template Predicted Secondary structure																			.	.																																																								.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160						.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																					.	.	.	.	.	.																			.
Query SS confidence																					.	.	.	.	.	.																			.
Query Sequence		S	G	I	A	G	M	C	G	G	Q	A	L	D	L	D	A	E	G	K	.	.	.	.	.	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	.	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V
Query Conservation																					.	.	.	.	.	.																			.
Alig confidence																					.	.	.	.	.	.																			.
Template Conservation
Template Sequence		Q	S	S	Y	Q	T	E	I	G	Q	T	L	D	L	L	T	A	P	Q	G	N	V	D	L	V	R	F	T	E	K	R	Y	K	S	I	V	K	Y	K	T	A	F	Y	S	F	Y	L	P	I	A	A	A	M	Y	M	A	G	I	D	G	E	K	E	H	A	N	A	K	K	I	L	L	E	M	G	E	F	F	Q	I
Template Known Secondary structure																				T	T	S			G	G	G														T					T											T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.																																					.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G	A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	A	R	K	K	A	R	D
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		Q	D	D	Y	L	D	L	F	G	D	P	S	V	T	G	K	.	I	G	T	D	I	Q	D	N	K	C	S	W	L	V	V	Q	C	L	Q	R	A	T	P	E	Q	Y	Q	I	L	K	E	N	Y	G	Q	K	E	A	E	K	V	A	R	V	K	A	L	Y	E	E	L	D	L	P	A	V	F	L	Q	Y	E	E	D
Template Known Secondary structure										S						S	S	.				T	T	T	T	T																									T	T																	T	T
Template Predicted Secondary structure																		.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L	A	D	Y	I
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		S	Y	S	H	I	M	A	L	I	E	Q	Y	A	.	A	P	L	P	P	A	V	F	L	G	L	A	R	K	I
Template Known Secondary structure															.	T	T	S
Template Predicted Secondary structure															.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions