Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 28 Aligned Residues 266 % Identity 22% Template c2e8xB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: s. cerevisiae geranylgeranyl pyrophosphate synthase in2 complex with magnesium and gpp Resolution 2.04 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	.	.	.	.	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L	I	H	D	D	L	P	A
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																																																												.	.
Template Conservation																																																																																.	.
Template Sequence		K	M	E	A	K	I	D	E	L	I	N	N	D	P	V	W	S	S	Q	N	E	S	L	I	S	K	P	Y	N	H	I	L	L	K	P	G	K	N	F	R	L	N	L	I	V	Q	I	N	R	V	M	N	L	P	K	D	Q	L	A	I	V	S	Q	I	V	E	L	L	H	N	S	S	L	L	I	D	D	I	.	.
Template Known Secondary structure												T	S																					T	S	S																																												.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D	L	D	A	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																																								.	.	.	.	.																		.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		E	D	N	A	P	L	R	R	G	Q	T	T	S	H	L	I	F	G	V	P	S	T	I	N	T	A	N	Y	M	Y	F	R	A	M	Q	L	V	S	Q	L	T	T	K	E	P	L	Y	H	N	L	I	T	I	F	.	.	.	.	.	N	E	E	L	I	N	L	H	R	G	Q	G	L	D	I	Y	W	R	D	F	L
Template Known Secondary structure			T	T		S			T	T																													T	T	S															.	.	.	.	.																					T
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	K	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G	A	D	Q	Q
Query Conservation
Alig confidence																																							.	.	.	.																										.	.	.	.
Template Conservation																																							.	.	.	.																										.	.	.	.
Template Sequence		P	E	I	I	P	T	Q	E	M	Y	L	N	M	V	M	N	K	T	G	G	L	F	R	L	T	L	R	L	M	E	A	L	S	P	S	H	G	.	.	.	.	H	S	L	V	P	F	I	N	L	L	G	I	I	Y	Q	I	R	D	D	Y	L	N	L	K	D	.	.	.	.	F	Q	M	S	F	A	E	D	I	T
Template Known Secondary structure		T	S																																				.	.	.	.	S		S																							.	.	.	.			T
Template Predicted Secondary structure																																							.	.	.	.																										.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	K	S	T	Y	P	A	L	L	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T	S	A	L	E	A	L	A	D	Y	I	I
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		E	G	K	L	S	F	P	I	V	H	A	L	N	F	T	K	T	K	G	Q	T	.	.	E	Q	H	N	E	I	L	R	I	L	L	L	R	T	S	D	K	D	I	K	L	K	L	I	Q	I	L	E
Template Known Secondary structure			T																T	T			.	.													T
Template Predicted Secondary structure																							.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions