Return to main results Retrieve Phyre Job Id

Job DescriptionP22939
Confidence100.00%DateThu Jan 5 11:39:12 GMT 2012
Rank35Aligned Residues262
% Identity21%Templatec2azjB_
PDB info PDB header:transferaseChain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: crystal structure for the mutant d81c of sulfolobus2 solfataricus hexaprenyl pyrophosphate synthase
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
Predicted Secondary structure 














Query SS confidence 















































































Query Sequence  QQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHD
Query Conservation    
      
   
             
          



 

 
 
      
         
 





 





Alig confidence 

























...


















































Template Conservation 
        
   
            ...         



 

 
        
         
 





 





Template Sequence  EFWLEAKATIDRLIEQFLNSNRDWDL. . . VDISSYILKDGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALC
Template Known Secondary structure  TTTTGGGGG...GTTS



TTT

SGGG
Template Predicted Secondary structure 





...









Template SS confidence 















































































   5....10.........20.........30 .........40.........50.........60.........70.........80.
 
   85....90.........100.........110.........120.........130.........140.........150.........160....
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  DLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDA
Query Conservation 

   
 
  


 
  
   
   


 

 
   
  

                      
        

  
   
Alig confidence 

..














































..........
















..
Template Conservation 

.. 
 
  


 
      
   


 

 
   
   
          ..........           

 

 ..
Template Sequence  DI. . VDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALN. . . . . . . . . . TSIELWKDTSVGALRDM. .
Template Known Secondary structure 
..



S
S
S
............
Template Predicted Secondary structure 

..




















............
Template SS confidence 















































































   82. ......90.........100.........110.........120.........130 .........140.......
 
   165....170.........180.........190.........200.........210.........220......... 230.........240
Predicted Secondary structure 










....






Query SS confidence 
































































. . . .










Query Sequence  EGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVV. . . . GDTATLGKRQG
Query Conservation       
   
  
   

  
       

 


         
   
  

 



 

 

  ....      

  
Alig confidence  ....





























..




























....










Template Conservation  ....     
      

  
       


 

..           
  

 



 

 

       
    

   
Template Sequence  . . . . YDNSDYIRTIELKTGSLFKLSTVLSAYASK. . HYNTKQQMLDVGKYLGIIYQVIDDFVDYKTKKVEEIDGSAKQLF
Template Known Secondary structure  ....SS


TTT..
GGGTTTSS
SS


ST
Template Predicted Secondary structure  ....


..












Template SS confidence 















































































   148.150.........160.........170....... ..180.........190.........200.........210.........220.
 
   241........250.........260.........270.........280.........290......
Predicted Secondary structure 











Query SS confidence 























































Query Sequence  ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQ
Query Conservation   

  

 
     

  
          
   
  
         
  
      
Alig confidence 























.......
























Template Conservation   

  

 
               ....... 
             
  
 
 
  
Template Sequence  KYYREGKLEEYVRSVYLEYKQKYD. . . . . . . ELISNIPFQSKYLSEIRSLPEFLAN
Template Known Secondary structure  TTS.......S


STTSSGGGG
Template Predicted Secondary structure 




.......






Template SS confidence 























































   222.......230.........240..... ....250.........260.........270
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions