Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 21 Aligned Residues 290 % Identity 22% Template c1yhlA_ PDB info PDB header:transferase Chain: A: PDB Molecule:farnesyl pyrophosphate synthase; PDBTitle: structure of the complex of trypanosoma cruzi farnesyl diphosphate2 synthase with risedronate, dmapp and mg+2 Resolution 1.95 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.												.	.
Predicted Secondary structure																																	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	.	.	.	.	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	.	.	.	.	.	.	.	.	.	.	.	N	T
Query Conservation																																	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.										.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.
Template Sequence		M	A	S	M	E	R	F	L	S	V	Y	D	E	V	Q	A	F	L	L	D	Q	L	Q	S	K	Y	E	I	D	P	N	R	A	R	Y	L	R	I	M	M	D	T	T	C	.	L	G	G	K	Y	F	R	G	M	T	V	V	N	V	A	E	G	F	L	A	V	T	Q	H	D	E	A	T	K	E	R	I	L	H	D
Template Known Secondary structure			T	T																																										.	S	S	S																	T	T	S
Template Predicted Secondary structure																																														.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L	I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	.	.	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S
Query Conservation																																														.	.
Alig confidence																							.	.																						.	.
Template Conservation																							.	.
Template Sequence		A	C	V	G	G	W	M	I	E	F	L	Q	A	H	Y	L	V	E	D	D	I	.	.	M	D	G	S	V	M	R	R	G	K	P	C	W	Y	R	F	P	G	V	T	T	Q	C	A	I	N	D	G	I	I	L	K	S	W	T	Q	I	M	A	W	H	Y	F	A	D	R	P	F	L	K	D	L	L	C	L	F	Q
Template Known Secondary structure																							.	.			T					T	T				G	G	G	S	T	T	T																								S	T	T		T	T
Template Predicted Secondary structure																							.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.																		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D	L	D	A	E	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	.	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence							.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation							.	.	.	.	.
Template Sequence		K	V	D	Y	A	.	.	.	.	.	T	A	V	G	Q	M	Y	D	V	T	S	M	C	D	S	N	K	L	D	P	E	V	A	Q	P	M	T	T	D	F	A	E	F	T	P	A	I	Y	K	R	I	V	K	Y	K	T	T	F	Y	T	Y	L	L	P	L	V	M	G	L	F	V	S	E	A	A	A	S	V	E	M
Template Known Secondary structure							.	.	.	.	.										T	T	T	B		G	G	G			T	T	S				B		S	S		T	T		S												T					T											T	T		G	G	G	S
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		158	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G	A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.
Template Sequence		N	L	V	E	R	V	A	H	L	I	G	E	Y	F	Q	V	Q	D	D	V	M	D	C	F	T	P	P	E	Q	L	G	K	.	V	G	T	D	I	E	D	A	K	C	S	W	L	A	V	T	F	L	G	K	A	N	A	A	Q	V	A	E	F	K	A	N	Y	G	D	K	D	P	A	K	V	A	V	V	K	R	L
Template Known Secondary structure																										S						S	S	.				T	T	T	T	T											T	T													T	T
Template Predicted Secondary structure																																		.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
									257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																												.
Query SS confidence		.	.	.	.	.	.	.																												.
Query Sequence		.	.	.	.	.	.	.	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	.	T	S	A	L	E	A	L	A	D	Y	I	I	Q	R	N	K
Query Conservation		.	.	.	.	.	.	.																												.
Alig confidence		.	.	.	.	.	.	.																												.
Template Conservation
Template Sequence		Y	S	E	A	N	L	Q	A	D	F	A	A	Y	E	A	E	V	V	R	E	V	E	S	L	I	E	Q	L	K	V	K	S	P	T	F	A	E	S	V	A	V	V	W	E	K	T	H	K	R	K	K
Template Known Secondary structure					T	T																								T	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions