Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 4 Aligned Residues 286 % Identity 35% Template c1wy0A_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthetase from2 pyrococcus horikoshii ot3 Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	P	Q	Q	L	E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L
Query Conservation
Alig confidence																								.	.
Template Conservation																								.	.
Template Sequence		E	L	F	A	R	I	K	E	K	A	K	L	I	D	E	K	I	F	E	L	I	P	.	.	E	K	D	P	R	V	L	Y	E	A	A	R	H	Y	P	L	A	G	G	K	R	V	R	P	F	V	V	L	T	S	T	E	A	V	G	G	D	P	L	R	A	I	Y	P	A	V	A	I	E	L	I	H	N	Y	S	L
Template Known Secondary structure																						S		.	.	S		S	S										T	G	G	G	T													T	T	T	T	T	S		G	G	G	G
Template Predicted Secondary structure																								.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D
Query Conservation
Alig confidence							.	.																																																							.	.	.	.	.
Template Conservation							.	.																																																							.	.	.	.	.
Template Sequence		V	H	D	D	I	.	.	M	D	M	D	E	T	R	R	G	K	P	T	V	H	R	I	W	G	V	N	M	A	I	L	A	G	D	L	L	F	S	K	A	F	E	A	V	A	R	A	E	I	P	P	E	K	K	A	R	V	L	E	V	I	.	.	.	.	.	V	K	A	S	N	E	L	C	E	G	Q	A	R	D
Template Known Secondary structure							.	.			T				S	T	T	S																													T			S													.	.	.	.	.
Template Predicted Secondary structure							.	.																																																							.	.	.	.	.
Template SS confidence
		84	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.	.	.
		162	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		L	D	A	E	G	K	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G
Query Conservation								.
Alig confidence								.																																.
Template Conservation																																								.
Template Sequence		L	E	F	E	K	K	S	T	V	T	I	E	E	Y	M	E	M	I	S	G	K	T	G	A	L	F	E	A	S	A	K	V	G	G	I	I	G	T	.	D	N	E	E	Y	I	K	A	L	S	S	W	G	R	N	V	G	I	A	F	Q	I	W	D	D	V	L	D	L	I	A	D	E	K	K	L	G	K	P	V	G
Template Known Secondary structure					T	T		S															T																	.																															S						T	S		S
Template Predicted Secondary structure																																								.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.																																					.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	Q	Q	L	G	K	S	T	Y	P	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	S	L	D	T
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																												.
Template Sequence		S	D	I	R	K	G	K	K	T	L	I	V	A	H	F	F	E	N	A	D	E	K	D	K	Q	R	F	L	K	I	F	G	K	D	I	K	S	D	V	M	E	A	I	D	L	L	K	K	Y	G	S	I	D	Y	A	A	E	I	A	K	D	M	I	K	K	A	N	E	A	L	R	I	L	P	.	K	S	K	A	R
Template Known Secondary structure							T																								T	S																		T	T																		T	T	G	G	G	S		.
Template Predicted Secondary structure																																																																												.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	E	A	L	A	D	Y	I	I	Q	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	D	L	E	L	L	A	K	F	I	V	E	R	E
Template Known Secondary structure											T	T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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