Job Description P22939 Confidence 100.00% Date Thu Jan 5 11:39:12 GMT 2012 Rank 18 Aligned Residues 277 % Identity 26% Template c1wmwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl diphosphate synthetase; PDBTitle: crystal structure of geranulgeranyl diphosphate synthase from thermus2 thermophilus Resolution 1.55 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	C	V	K	Q	A	N	Q	A	L	S	R	F	I	A	P	L	P	F	Q	N	T	P	V	V	E	T	M	Q	Y	G	A	L	L	G	G	K	R	L	R	P	F	L	V	Y	A	T	G	H	M	F	G	V	S	T	N	T	L	D	A	P	A	A	A	V	E	C	I	H	A	Y	S	L	I	H	D	D	L	P
Query Conservation
Alig confidence																	.	.	.																																																														.
Template Conservation																	.	.	.																																																														.
Template Sequence		E	A	I	R	Q	A	L	Q	E	R	L	L	A	R	L	.	.	.	D	H	P	D	P	L	Y	R	D	L	L	Q	D	Y	P	R	R	G	G	K	M	L	R	G	L	L	T	V	Y	S	A	L	A	H	G	A	P	L	E	A	G	L	E	A	A	T	A	L	E	L	F	Q	N	W	V	L	V	H	D	D	I	.
Template Known Secondary structure																T	.	.	.			S	S													T																	T	T																											.
Template Predicted Secondary structure																	.	.	.																																																														.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20				.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	D	D	D	D	L	R	R	G	L	P	T	C	H	V	K	F	G	E	A	N	A	I	L	A	G	D	A	L	Q	T	L	A	F	S	I	L	S	D	A	D	M	P	E	V	S	D	R	D	R	I	S	M	I	S	E	L	A	S	A	S	G	I	A	G	M	C	G	G	Q	A	L	D	L	D	A	E	G	K
Query Conservation
Alig confidence		.																																																							.	.	.	.	.
Template Conservation		.																																																							.	.	.	.	.
Template Sequence		.	E	D	G	S	E	E	R	R	G	R	P	A	L	H	R	L	H	P	M	P	L	A	L	N	A	G	D	A	M	H	A	E	M	W	G	L	L	A	E	G	L	A	R	G	L	F	P	P	E	V	L	L	E	F	.	.	.	.	.	H	E	V	V	R	R	T	A	Y	G	Q	H	L	D	L	L	W	T	L	G
Template Known Secondary structure		.			T					T	T								S																										T	T	S	S									.	.	.	.	.																				S
Template Predicted Secondary structure		.																																																							.	.	.	.	.
Template SS confidence
			82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
					168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	H	V	P	L	D	A	L	E	R	I	H	R	H	K	T	G	A	L	I	R	A	A	V	R	L	G	A	L	S	A	G	D	K	G	R	R	A	L	P	V	L	D	K	Y	A	E	S	I	G	L	A	F	Q	V	Q	D	D	I	L	D	V	V	G	D	T	A	T	L	G	K	R	Q	G	A	D	Q	Q
Query Conservation		.	.	.
Alig confidence		.	.	.																																					.	.																											.
Template Conservation																																									.	.																											.
Template Sequence		G	T	F	D	L	R	P	E	D	Y	F	R	M	V	A	H	K	A	A	Y	Y	T	A	V	A	P	L	R	L	G	A	L	L	A	G	K	T	P	P	.	.	A	A	Y	E	E	G	G	L	R	L	G	T	A	F	Q	I	V	D	D	V	L	N	L	E	G	G	.	E	A	Y	G	K	E	R	A	G	D	L	Y
Template Known Secondary structure		S	S																T																T	T					.	.																								S		S	.				S	S	S	T	T
Template Predicted Secondary structure																																									.	.																											.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.
		245	.	.	.	.	250	.	.	.	.																																									.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query Sequence		L	G	K	S	T	Y	P	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	Q	A	R	K	K	A	R	D	L	I	D	D	A	R	Q	S	L	K	Q	L	A	E	Q	.	.	.	S
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation
Template Sequence		E	G	K	R	T	L	I	L	L	R	F	L	E	E	A	P	P	E	E	R	A	R	A	L	A	L	L	A	L	P	R	E	A	K	P	E	A	E	V	G	W	L	L	E	R	L	L	A	S	R	A	L	A	W	A	K	A	E	A	K	R	L	Q	A	E	G	L	A	L	L	E	A	A	F	Q	D	L	P	G	K
Template Known Secondary structure			T													S													T	S		G	G	G	S															S																							T	G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	T	S	A	L	E	A	L	A	D	Y	I	I	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	L	D	H	L	R	G	L	L	A	A	L	V	E	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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