 |
| Job Description | P22939 | | Confidence | 6.63% | Date | Thu Jan 5 11:39:12 GMT 2012 |
| Rank | 84 | Aligned Residues | 30 |
| % Identity | 13% | Template | c1u57A_ |
| PDB info |
PDB header:viral protein | Chain: A: PDB Molecule:gag polyprotein; |
PDBTitle: nmr structure of the (345-392)gag sequence from hiv-1
|
| Resolution | UNK |
|
| | |
53 | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
| Predicted Secondary structure | |
 | | | | | |
|
|
|
| | | | | | | | | | | | | | | | | | | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
Y | A | T | G | H | M | F | G | V | S | T | N | T | L | D | A | P | A | A | A | V | E | C | I | H | A | Y | S | L | I |
| Query Conservation | |
| | | | | | |
| | | | | | | | | |
| |
|
|
|
|
|
| |
|
|
|
|
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| | | | | | | | | |
| Template Sequence | |
M | T | A | C | Q | G | V | G | G | P | G | H | K | A | R | V | L | A | E | A | M | S | Q | V | T | N | S | A | T | I |
| Template Known Secondary structure | |
| | | B | T | T | T | S | B |
| T | T | | | | | | | | | | | | | | | | | | |
| Template Predicted Secondary structure | |
| | | | |
|
|
|
|
|
| | | | | | | | | | | | | | |
|
|
|
| |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
