Return to main results Retrieve Phyre Job Id

Job DescriptionP39285
Confidence20.62%DateThu Jan 5 11:58:57 GMT 2012
Rank442Aligned Residues40
% Identity15%Templated2ba0a1
SCOP infoOB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   935....940.........950.........960.........970.........
Predicted Secondary structure 















Query SS confidence 












































Query Sequence  RIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQF
Query Conservation    

 
      
 
  
  
 
 
   
     


        
Alig confidence 






.....
































Template Conservation 
 



 .....
 
  
   
  
 
     
 
   

     
Template Sequence  SVGDVVI. . . . . GIIREVAANGWAVDIYSPYQAFLPVSENPEMKP
Template Known Secondary structure 
TT
.....
SS
SSSS
GGG
TT

T
Template Predicted Secondary structure 



.....













Template SS confidence 












































   56...60.. .......70.........80.........90.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions