Job Description P39285 Confidence 22.60% Date Thu Jan 5 11:58:57 GMT 2012 Rank 355 Aligned Residues 44 % Identity 14% Template d1u7ka_ SCOP info Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Resolution 1.85

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Show / Hide Conservation and Alignment quality

		961	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	W	D	R	K	E	I	I	V	P	N	K	A	F	I	T	E	Q	F	I	N	W	S	L	S	D	S	V	T	R	V	V	L	T	I	P	A	P	A	D	A	N	S	E	E	V	T	E	I	L	L	T	A	A	R	R	C
Query Conservation
Alig confidence												.	.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.															.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	N	G	Q	L	Q	Y	W	P	.	.	.	F	S	S	S	D	L	Y	N	W	K	N	N	N	P	.	.	.	.	.	.	.	.	.	.	S	F	S	E	D	P	G	K	L	T	A	L	I	E	S	V	L	T	T	H
Template Known Secondary structure			T	T	S	S						.	.	.												T	S		.	.	.	.	.	.	.	.	.	.		T	T	T																T
Template Predicted Secondary structure												.	.	.															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.											.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions