Job Description P39285 Confidence 84.09% Date Thu Jan 5 11:58:57 GMT 2012 Rank 49 Aligned Residues 344 % Identity 5% Template c3r6nA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:desmoplakin; PDBTitle: crystal structure of a rigid four spectrin repeat fragment of the2 human desmoplakin plakin domain Resolution 2.95 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	S	K	Q	I	T	Q	E	L	E	Q	A	K	A	A	K	P	A	Q	P	E	V	V	E	A	L	Q	S	A	L	N	A	L	E	E	R	K	G	S	L	E	R	I	K	Q	Y	Q	Q	V	I	D	N	Y	P	K	L	S	A	T	L	R	A	Q	L	N	N	M	R	D	E	P	R	S	V	S	P	G	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	V	E	Q	H	I	N	S	H	R	G	I	H	N	S	I	G	D	Y	R	W	Q	L	D	K	I	K	A	D	L	R	E	K	S	A	I	Y	Q	L	E	E	E	Y	E	N	L	L	K	A	S	F	E	R	M	D	H	L	R	Q	L	Q	N	I	I	Q	A	T	S	R	E	I	M	W	I	N	D	C	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		103	.	.											.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	A	.	.	.	.	.	.	.	.	.	.	L	N	Q	E	I	L	Q	V	S	S	Q	L	L	D	K	S	R	Q	A	Q	Q	E	Q	E	R	A	R	E	I	A	D	S	L	N	Q	L	P	Q	Q	Q	T	D	A	R	R	Q	L	N	E	I	E	R	R	L	G	T	L	T	G	N	T	P	L	N	Q	A	Q
Query Conservation					.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	L	L	Y	D	W	S	D	K	N	T	N	I	A	Q	K	Q	E	A	F	S	I	R	M	S	Q	L	E	V	K	E	K	E	L	N	K	L	K	Q	E	S	D	Q	L	V	L	N	Q	H	P	A	S	D	K	I	E	A	Y	M	D	T	L	Q	T	Q	W	S	W	I	L	Q	I	T	K	C	I	D	V	H
Template Known Secondary structure					S				S	T	T				T	T																																	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		N	F	A	L	Q	S	D	S	A	R	L	K	A	L	V	D	E	L	E	L	A	Q	L	S	A	N	N	R	Q	E	L	A	R	L	R	S	E	L	A	E	K	E	S	Q	Q	L	D	A	Y	L	Q	A	L	R	N	Q	L	N	S	Q	R	Q	L	E	A	E	R	A	L	E	S	T	E	L	L	A	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																																																														.	.	.	.
Template Conservation
Template Sequence		L	K	E	N	A	A	Y	F	Q	F	F	E	E	A	Q	S	T	E	A	Y	L	K	G	L	Q	D	S	I	R	K	K	Y	P	C	D	K	N	M	P	L	Q	H	L	L	E	Q	I	K	E	L	E	K	E	R	E	K	I	L	E	Y	K	R	Q	V	Q	N	L	V	N	K	S	K	K	I	V	Q	L	K	P	R
Template Known Secondary structure																																	S				T	T																																			T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
																																																									249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	S	A	D	L	P	K	D	I	V	A	Q	F	K	I	N	R	E	L	S	A	A	L	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	P	D	Y	R	S	N	K	P	I	I	L	R	A	L	C	D	Y	K	Q	D	Q	K	I	V	H	K	G	D	E	C	I	L	K	D	N	N	E	R	S	K	W	Y	V	T	G	P	G	G	V	D	M	L	V	P	S	V	G	L	I	I	P	P	P	N	P	L	A	V	D	L	S	C	K	I	E	Q	Y	Y	E
Template Known Secondary structure		S	T	T				S	S							S	S					T	T					T	T									S	S	S	S							S	S	S							G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	A	Q	R	M	D	L	V	A	S	Q	Q	R	Q	A	A	S	Q	T	L	Q	V	R	Q	A	L	N	T	L	R	E	Q	S	Q	W	L	G	S	S	N	L	L	G	E	A	L	R	A	Q	V	A	R	L	P	E	M	P	K	P	Q	Q	L	D	T	E	M	A	Q	L	R	V	Q	R	L	R	Y	E	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	L	A	L	W	N	Q	L	Y	I	N	M	K	S	L	V	S	W	H	Y	C	M	I	D	I	E	K	I	R	A	M	T	I	A	K	L	K	T	M	R	Q	E	D	Y	M	K	T	I	A	D	L	E	L	H	Y	Q	E	F	I	R	N	S	Q	G	S	E	M	F	G	D	D	D	K	R	K	I	Q	S	Q
Template Known Secondary structure																																T							T	T	S		T	T	T																				T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
		354	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	K	Q	P	L	L	R	Q	I	H	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	D	A	Q	K	H	Y	Q	T	L	V	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		612	.	.	.	.	.	.	.	620	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions