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Job DescriptionP39285
Confidence84.09%DateThu Jan 5 11:58:57 GMT 2012
Rank49Aligned Residues344
% Identity5%Templatec3r6nA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:desmoplakin; PDBTitle: crystal structure of a rigid four spectrin repeat fragment of the2 human desmoplakin plakin domain
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70.........80.........90.........100..
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Query Sequence  PDSKQITQELEQAKAAKPAQPEVVEALQSALNALEERKGSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMS
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Template Conservation     
  
     
   
      
  
            
      
          
                      
Template Sequence  ASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEE
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   212.......220.........230.........240.........250.........260.........270.........280.........290.
 
   103.. ....110.........120.........130.........140.........150.........160.........170..
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Query Sequence  TDA. . . . . . . . . . LNQEILQVSSQLLDKSRQAQQEQERAREIADSLNQLPQQQTDARRQLNEIERRLGTLTGNTPLNQAQ
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Template Conservation                         
  
                 
                 
                 
Template Sequence  EELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVH
Template Known Secondary structure  S


STT


TTTT
TT
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   292.......300.........310.........320.........330.........340.........350.........360.........370.
 
   173......180.........190.........200.........210.........220.........230.........240........
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Query Sequence  NFALQSDSARLKALVDELELAQLSANNRQELARLRSELAEKESQQLDAYLQALRNQLNSQRQLEAERALESTELLA. . . .
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Template Conservation                                                                    
      
      
Template Sequence  LKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPR
Template Known Secondary structure  S


TT

TT



GGG
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   372.......380.........390.........400.........410.........420.........430.........440.........450.
 
   249250.........260.........270...
Predicted Secondary structure  .......................................................



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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ENSADLPKDIVAQFKINRELSAALN
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Template Conservation                
                 
                                               
Template Sequence  NPDYRSNKPIILRALCDYKQDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPNPLAVDLSCKIEQYYE
Template Known Secondary structure  STT


SS

SS
TT
TT

SSSS
SSS

GGG

S

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   452.......460.........470.........480.........490.........500.........510.........520.........530.
 
   274.....280.........290.........300.........310.........320.........330.........340.........350...
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Query Sequence  QQAQRMDLVASQQRQAASQTLQVRQALNTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRYEDL
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Template Conservation                                                     
   
                    
   
Template Sequence  AILALWNQLYINMKSLVSWHYCMIDIEKIRAMTIAKLKTMRQEDYMKTIADLELHYQEFIRNSQGSEMFGDDDKRKIQSQ
Template Known Secondary structure  T

TTS
TTTTT
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   532.......540.........550.........560.........570.........580.........590.........600.........610.
 
   354.....360......
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Query Sequence  LNKQPLLRQIHQA
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Template Conservation          
 
  
Template Sequence  FTDAQKHYQTLVI
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   612.......620....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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