Job Description P39285 Confidence 25.24% Date Thu Jan 5 11:58:57 GMT 2012 Rank 285 Aligned Residues 171 % Identity 10% Template c3r2pA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein a-i; PDBTitle: 2.2 angstrom crystal structure of c terminal truncated human2 apolipoprotein a-i reveals the assembly of hdl by dimerization. Resolution 2.20 Å

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		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	V	A	Q	F	K	I	N	R	E	L	S	A	A	L	N	Q	Q	A	Q	R	M	D	L	V	A	S	Q	Q	R	Q	A	A	S	Q	T	L	Q	V	R	Q	A	L	N	T	L	R	E	Q	S	Q	W	L	G	S	S	N	L	L	G	E	A	L	R	A	Q	V	A	R	L	P	E	M	P	K	P	Q	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	W	D	R	V	K	D	L	A	T	V	Y	V	D	V	L	K	D	S	G	R	D	Y	V	S	Q	F	E	G	S	A	L	G	K	Q	L	N	L	K	L	L	D	N	W	D	S	V	T	S	T	F	S	K	L	R	E	Q	L	G	P	V	T	Q	E	F	W	D	N	L	E	K	E	T	E	G	L	R	Q	E	M
Template Known Secondary structure		T	T											T																	S						T	T					T	T		S		S	S												S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		D	T	E	M	A	Q	L	R	V	Q	R	L	.	R	Y	E	D	L	L	N	K	Q	P	L	L	R	Q	I	H	Q	A	D	G	Q	P	L	T	A	E	Q	N	R	I	L	E	A	Q	L	R	T	Q	R	E	L	L	N	S	L	L	Q	G	G	D	T	L	L	L	E	L	T	K	L	K	V	S	N	G	Q	L	E
Query Conservation														.
Alig confidence														.																																																			.	.
Template Conservation																																																																	.	.
Template Sequence		S	K	D	L	E	E	V	K	A	K	V	Q	P	Y	L	D	D	F	Q	K	K	W	Q	E	E	M	E	L	Y	R	Q	K	V	E	P	L	R	A	E	L	Q	E	G	A	R	Q	K	L	H	E	L	Q	E	K	L	S	P	L	G	E	E	M	R	.	.	D	R	A	R	A	H	V	D	A	L	R	T	H	L	A
Template Known Secondary structure																																																		T	T	T	T	T	T	S									.	.
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	K	E	V	N	E	A	T	H	R	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Y	S	D	E	L	R	Q	R	L	A	A	R	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions