Job Description P39285 Confidence 29.68% Date Thu Jan 5 11:58:57 GMT 2012 Rank 242 Aligned Residues 379 % Identity 12% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520		.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		L	P	L	F	G	A	L	I	L	V	G	C	S	I	Y	S	R	R	Y	F	T	R	F	L	E	R	S	A	A	K	V	G	K	V	T	Q	D	H	F	W	L	T	L	R	.	T	L	F	W	S	I	L	V	A	S	P	L	P	V	L	W	M	T	L	G	Y	G	L	R	E	A	W	P	Y	P	L	A	V	A	I
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence		A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	V	G	L	L	M	A	L	V	P	V	V	A	Q	L	N	G	A	G	R	Q	H	K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K
Template Known Secondary structure																									G	G	G		T	T	S		S	S	S	S	S	S	S																															S	S		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	G	V	T	A	T	V	P	L	L	W	V	V	M	I	C	A	T	F	A	R	P	N	G	L	F	I	A	H	F	G	W	P	R	E	R	V	S	R	G	M	R	Y	Y	L	M	S	I	G	L	I	V	P	L	I	M	A	L	M	M	F	D	N	L	D	D	R	E	F	S	G	S	L	G	R	L	C	F	I
Query Conservation
Alig confidence																																		.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T	K	.	.	.	.	.	.	P	A	M	V	I	G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V
Template Known Secondary structure																							T	T	T	T		T	T	S				.	.	.	.	.	.																						T	T		S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.							.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.										.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.
Query Sequence		L	I	C	G	A	L	A	V	V	T	L	S	L	K	K	A	G	I	P	L	Y	L	N	K	E	G	S	G	D	N	I	T	N	H	M	L	W	N	M	M	I	G	A	P	L	V	A	I	L	A	S	A	V	G	Y	L	A	T	A	Q	.	.	.	.	.	.	.	.	.	A	L	L	A	R	L	E	T	S	V	A
Query Conservation																																																														.	.	.	.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R	L	F	R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F
Template Known Secondary structure															T		T	T												S	S	T	T	T	S	T	T	T	T																									T			S		S	T					T	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		707	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	F	L	L	L	V	V	Y	H	V	I	R	R	W	M	L	I	Q	R	R	R	L	A	F	D	R	A	K	H	R	R	A	E	M	L	A	Q	R	A	R	G	E	E	E	A	H	H	H	S	S	P	E	G	A	I	E	V	D	E	S	E	V	D	L	D	A	I	S	A	Q	S	L	R	L	V	R	S	I	L
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	D	T	K	G	A	A	I	A	A	N	V	G	L	M	T	G	L
Template Known Secondary structure																							G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S				T	T	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.																																						.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		787	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	I	A	L	L	S	V	I	V	L	W	S	E	I	H	S	A	F	G	F	L	E	N	I	S	L	W	D	V	T	S	T	V	Q	G	V	E	S	L	E	P	I	T	L	G	A	V	L	I	A	I	L	V	F	I	I	T	T	Q	L	V	R	N	L	P	A	L	L	E	L	A	I	L	Q	H	L	D	L	T
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Sequence		A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	.	.	.	.	.	.	.	G	Y	K
Template Known Secondary structure																					T	S	S		S	S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.																										G	.	.	.	.	.	.	.	G	G	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.															.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.								.	.	.
		867	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.		.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		P	G	T	G	Y	A	I	T	T	I	T	K	Y	L	L	M	L	I	G	G	L	V	G	F	S	M	I	.	G	I	E	W	S	K	L	Q	W	L	V	A	A	L	G	V	G	L	G	F	G	L	Q	E	I	F
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V	L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M
Template Known Secondary structure		S																												S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.