 |
Job Description | P39285 | Confidence | 21.00% | Date | Thu Jan 5 11:58:57 GMT 2012 |
Rank | 421 | Aligned Residues | 72 |
% Identity | 17% | Template | c3i38F_ |
PDB info |
PDB header:chaperone | Chain: F: PDB Molecule:putative chaperone dnaj; |
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
|
Resolution | 2.30 Å |
|
 |
  |   |
937 | . | . | 940 | . | . | . | . | . | . | . | . | . | 950 | . | . | . | . | . | . | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | . | . | . | . | . | . | . | . | 980 | . | . | . | . | . | . | . | . | . | 990 | . | . | . | . | . | . | . | . | . | 1000 | . | . | . | . | . | . | . | . | . | 1010 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | D | T | V | T | I | R | D | L | T | G | S | V | T | K | I | N | T | R | A | T | T | I | S | D | W | D | R | K | E | I | I | V | P | N | K | A | F | I | T | E | Q | F | I | N | W | S | L | S | D | S | V | T | R | V | V | L | T | I | P | A | P | A | D | A | N | S | E | E | V | T | E | I | L | L | T | A | A | R | R |
Query Conservation |   |
|
|   |
|   |   |   |   |   |   |
|   |
|   |   |
|   |   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |
|   |
|
|   |
|   |   |   | . |
|   |
|   |   |
| . | . | . |   |   |   |
|   |   |   |   |
|   |
|   |
|   |
| . | . | . | . | . | . | . |   |   |
|
|
|   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |
|
|   |   |
|   |   |   |   |   |   |
Template Sequence |   |
G | A | K | V | T | V | P | T | L | K | E | S | I | L | . |
L | T | V | P | P | G | . |
. |
. |
S | Q | A | G | Q | R | L | R | I | K | G | K | G | L | V | . |
. |
. |
. |
. |
. |
. |
H | T | G | D | L | F | A | V | I | K | I | V | X | P | T | K | P | D | E | K | A | R | E | L | W | Q | Q | L | A | A | A | E | A | S |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S | S | S |
|  |  | . |  |  |  |
| T | T | . | . | . |
|
| T | T |
|  |  |  |  | T | T |
| S |
|
| . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |
|
|
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|  |  | . |  |  |  |
|
|
| . | . | . |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
224 | . | . | . | . | . | 230 | . | . | . | . | . | . | . | |
. | . | 240 | . | . | . | |
|
|
. | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . |
  |
  |   |
|
1017 | . | . |
Predicted Secondary structure |   |
. |
|  |  |
Query SS confidence |   |
. |
|
|
|
Query Sequence |   |
. |
C | S | L |
Query Conservation |   |
. |   |   |   |
Alig confidence |   |
. |
|
|
|
Template Conservation |   |
  |   |   |   |
Template Sequence |   |
F | D | P | R |
Template Known Secondary structure |   |
|
| G | G |
Template Predicted Secondary structure |   |
|
|
|
|
Template SS confidence |   |
|
|
|
|
  |   |
296 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|