Job Description P39285 Confidence 29.65% Date Thu Jan 5 11:58:57 GMT 2012 Rank 244 Aligned Residues 270 % Identity 5% Template c3i2wB_ PDB info PDB header:endocytosis Chain: B: PDB Molecule:syndapin; PDBTitle: crystal structure of efc/f-bar domain of drosophila2 syndapin/pacsin Resolution 2.67 Å

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		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	I	E	R	R	L	G	T	L	T	G	N	T	P	L	N	Q	A	Q	N	F	A	L	Q	S	D	S	A	R	L	K	A	L	V	D	E	L	E	L	A	Q	L	S	A	N	N	R	Q	E	L	A	R	L	R	S	E	L	A	E	K	E	S	Q	Q	L	D	A	Y	L	Q	A	L	R	N	Q	L	N	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	T	T	K	R	I	E	D	G	Y	K	L	C	N	D	L	Q	Q	L	I	Q	E	R	A	D	I	E	K	G	Y	A	K	S	L	R	T	W	S	K	K	W	G	E	L	I	E	K	G	P	E	Y	G	T	T	E	A	A	W	K	G	V	L	T	E	S	E	R	I	S	D	V	H	X	K	I	K	D	N	L
Template Known Secondary structure																																																		S	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	L	E	A	E	R	A	L	E	S	T	E	L	L	A	E	N	S	A	D	L	P	K	D	I	V	A	Q	F	K	I	N	R	E	L	S	A	A	L	N	Q	Q	A	Q	R	M	D	L	V	A	S	Q	Q	R	Q	A	A	S	Q	T	L	Q	V	R	Q	A	L	N	T	L	R	E	Q	S	Q	W	L	G	S
Query Conservation
Alig confidence																																																																												.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		C	N	D	V	N	S	Q	I	K	T	W	Q	K	E	N	Y	H	H	T	L	X	Q	I	K	E	R	K	D	L	E	D	L	F	K	K	A	Q	K	P	W	A	K	L	L	A	K	V	E	K	A	K	A	D	Y	H	S	A	C	K	T	E	R	S	A	T	N	Q	E	R	N	A	N	A	D	.	.	.	.	.	.
Template Known Secondary structure				T																	T	T																																																	T	T	T	T		.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	L	L	G	E	A	L	R	A	Q	V	A	R	L	P	E	M	P	K	P	Q	Q	L	D	T	E	M	A	Q	L	R	V	Q	R	L	R	Y	E	D	L	L	N	K	Q	P	L	L	R	Q	I	H	Q	A	D	G	Q	P	L	T	A	E	Q	N	R	I	L	E	A	Q	L	R	T	Q	R	E	L	L	N	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	L	S	P	D	Q	V	K	K	X	H	D	R	V	Q	K	T	K	D	Q	V	Q	K	C	R	E	K	Y	E	Q	A	I	A	E	I	T	K	Y	N	S	V	Y	I	E	D	X	T	S	V	F	E	K	C	Q	T	F	E	K	T	R	L	Q	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		393	.	.	.	.	.	.	400	.	.	.	.						.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		L	L	Q	G	G	D	T	L	L	L	E	L	.	.	.	.	.	T	K	L	K	V	S	N	G	Q	L	E	D	A	L	K	E	V	N	E	A	T	H	R	Y	L	F	W	T	S	D	V	R	P	M	T	I	A	W	P	L
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.
Template Conservation
Template Sequence		F	K	E	I	L	F	N	V	H	S	C	L	D	L	T	K	V	Q	S	L	P	Q	I	Y	E	E	F	S	H	T	I	N	N	A	D	Q	Q	K	D	L	K	W	W	S	N	N	H	G	I	N	X	A	X	N	W	P	S
Template Known Secondary structure															G	G	G		S															T															S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions