Job Description P39285 Confidence 42.59% Date Thu Jan 5 11:58:57 GMT 2012 Rank 148 Aligned Residues 84 % Identity 11% Template c2zvnF_ PDB info PDB header:signaling protein/transcription Chain: F: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cozi domain incomplex with diubiquitin in p2121212 space group Resolution 3.00 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		I	K	Q	Y	Q	Q	V	I	D	N	Y	P	K	L	S	A	T	L	R	A	Q	L	N	N	M	R	D	E	P	R	S	V	S	P	G	M	S	T	.	D	A	L	N	Q	E	I	L	Q	V	S	S	Q	L	L	D	K	S	R	Q	A	Q	Q	E	Q	E	R	A	R	E	I	A	D	S	L	N	Q	L	P	Q	Q
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		L	E	D	L	R	Q	Q	L	Q	Q	A	E	E	A	L	V	A	K	Q	E	L	I	D	K	L	K	E	E	A	E	Q	H	K	I	V	M	E	T	V	P	V	L	K	A	Q	A	D	I	Y	K	A	D	F	Q	A	E	R	H	A	R	E	K	L	V	E	K	K	E	Y	L	Q	E	Q	L	E	Q	L	Q	R	E
Template Known Secondary structure																																						T	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		145	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	D	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	N	K	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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